miRNA display CGI


Results 101 - 116 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19338 5' -61.4 NC_004685.1 + 16321 0.66 0.511484
Target:  5'- gGCCAGca-UCGCCGcGGCcaccgGCGCCGcGCu -3'
miRNA:   3'- -CGGUCuacAGCGGC-CUG-----CGCGGCcCG- -5'
19338 5' -61.4 NC_004685.1 + 10542 0.66 0.460786
Target:  5'- gGCCGGGUGgcuUCgacaacgugggcggGCUGGACGUGUucaaggagUGGGCg -3'
miRNA:   3'- -CGGUCUAC---AG--------------CGGCCUGCGCG--------GCCCG- -5'
19338 5' -61.4 NC_004685.1 + 53714 0.67 0.454287
Target:  5'- aCCGGAUGggguagcCGUCGGAgccgUGCGCCauuGGCa -3'
miRNA:   3'- cGGUCUACa------GCGGCCU----GCGCGGc--CCG- -5'
19338 5' -61.4 NC_004685.1 + 40869 0.67 0.454287
Target:  5'- uGCUGGc-GUCGCgGGcCGCGC-GGGCc -3'
miRNA:   3'- -CGGUCuaCAGCGgCCuGCGCGgCCCG- -5'
19338 5' -61.4 NC_004685.1 + 38249 0.69 0.343587
Target:  5'- cGCCGG-UGUCGguaCCGGGCG-GCaaaccguaGGGCa -3'
miRNA:   3'- -CGGUCuACAGC---GGCCUGCgCGg-------CCCG- -5'
19338 5' -61.4 NC_004685.1 + 23769 0.68 0.359301
Target:  5'- uCCAGc--UUGCCGGGCaGCGCCGaGCg -3'
miRNA:   3'- cGGUCuacAGCGGCCUG-CGCGGCcCG- -5'
19338 5' -61.4 NC_004685.1 + 15186 0.68 0.367345
Target:  5'- gGCgCAGAcaucgaaGUCGgCGuGGCGUucGCCGGGCg -3'
miRNA:   3'- -CG-GUCUa------CAGCgGC-CUGCG--CGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 62834 0.68 0.367345
Target:  5'- aGCCGGGgcacccgggGUCacggcgggaGCCGG-UGCGCCugGGGCg -3'
miRNA:   3'- -CGGUCUa--------CAG---------CGGCCuGCGCGG--CCCG- -5'
19338 5' -61.4 NC_004685.1 + 37059 0.68 0.367345
Target:  5'- cGCCGGuguuguugGUCgGCCcaggGGGCGgGCCGGuGCc -3'
miRNA:   3'- -CGGUCua------CAG-CGG----CCUGCgCGGCC-CG- -5'
19338 5' -61.4 NC_004685.1 + 35909 0.68 0.392208
Target:  5'- -gCGGucgcUGUCGCCGacaccgcgacGACGCaccacgucucGCCGGGCa -3'
miRNA:   3'- cgGUCu---ACAGCGGC----------CUGCG----------CGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 5566 0.68 0.400736
Target:  5'- aUCAGGUGgcgaGCCGG-UGaGCUGGGCg -3'
miRNA:   3'- cGGUCUACag--CGGCCuGCgCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 59868 0.68 0.400736
Target:  5'- cGgUAGGUGUgCGCgGGACcaccuCGCCGcGGCg -3'
miRNA:   3'- -CgGUCUACA-GCGgCCUGc----GCGGC-CCG- -5'
19338 5' -61.4 NC_004685.1 + 10932 0.67 0.40938
Target:  5'- cCUGGAUG-Ca--GGAcCGCGCCGGGCa -3'
miRNA:   3'- cGGUCUACaGcggCCU-GCGCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 7328 0.67 0.435998
Target:  5'- gGCUGGGU-UCaccaucuacgaGCCGGucaACGgGCCGGGCa -3'
miRNA:   3'- -CGGUCUAcAG-----------CGGCC---UGCgCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 9268 0.67 0.445089
Target:  5'- cGCUGGGUGUCG--GGAUGgaGCgGGGCa -3'
miRNA:   3'- -CGGUCUACAGCggCCUGCg-CGgCCCG- -5'
19338 5' -61.4 NC_004685.1 + 25993 0.66 0.512464
Target:  5'- aGCCGGGcagggugcgcagccgGUCGCCGaGCGCggGCCGGa- -3'
miRNA:   3'- -CGGUCUa--------------CAGCGGCcUGCG--CGGCCcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.