miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19338 5' -61.4 NC_004685.1 + 62834 0.68 0.367345
Target:  5'- aGCCGGGgcacccgggGUCacggcgggaGCCGG-UGCGCCugGGGCg -3'
miRNA:   3'- -CGGUCUa--------CAG---------CGGCCuGCGCGG--CCCG- -5'
19338 5' -61.4 NC_004685.1 + 5566 0.68 0.400736
Target:  5'- aUCAGGUGgcgaGCCGG-UGaGCUGGGCg -3'
miRNA:   3'- cGGUCUACag--CGGCCuGCgCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 3701 0.66 0.463585
Target:  5'- gGCgCGGGUGUaucgCGCCGaGuACGgGCUGGcGCa -3'
miRNA:   3'- -CG-GUCUACA----GCGGC-C-UGCgCGGCC-CG- -5'
19338 5' -61.4 NC_004685.1 + 48330 0.66 0.505622
Target:  5'- uGCCAGAucgccgacgccacguUGUCGgCGGugGCauuGCCGuaGCc -3'
miRNA:   3'- -CGGUCU---------------ACAGCgGCCugCG---CGGCc-CG- -5'
19338 5' -61.4 NC_004685.1 + 37704 0.7 0.285756
Target:  5'- uGCCGG-UGUUGuuGacgacgaucGACGgGCCGGGUg -3'
miRNA:   3'- -CGGUCuACAGCggC---------CUGCgCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 12624 0.69 0.328374
Target:  5'- gGCCGGGcagGaaaUCGaCCGGcugcuCGcCGCCGGGCg -3'
miRNA:   3'- -CGGUCUa--C---AGC-GGCCu----GC-GCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 10932 0.67 0.40938
Target:  5'- cCUGGAUG-Ca--GGAcCGCGCCGGGCa -3'
miRNA:   3'- cGGUCUACaGcggCCU-GCGCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 55544 0.66 0.511484
Target:  5'- gGCgAGcAUGUCcuGCauGGCGCGuuGGGUg -3'
miRNA:   3'- -CGgUC-UACAG--CGgcCUGCGCggCCCG- -5'
19338 5' -61.4 NC_004685.1 + 37132 0.69 0.343587
Target:  5'- cGCCGcGAUcugcuccggcGUgGCCGGGcCGaCGCCGGGa -3'
miRNA:   3'- -CGGU-CUA----------CAgCGGCCU-GC-GCGGCCCg -5'
19338 5' -61.4 NC_004685.1 + 16321 0.66 0.511484
Target:  5'- gGCCAGca-UCGCCGcGGCcaccgGCGCCGcGCu -3'
miRNA:   3'- -CGGUCuacAGCGGC-CUG-----CGCGGCcCG- -5'
19338 5' -61.4 NC_004685.1 + 59868 0.68 0.400736
Target:  5'- cGgUAGGUGUgCGCgGGACcaccuCGCCGcGGCg -3'
miRNA:   3'- -CgGUCUACA-GCGgCCUGc----GCGGC-CCG- -5'
19338 5' -61.4 NC_004685.1 + 15186 0.68 0.367345
Target:  5'- gGCgCAGAcaucgaaGUCGgCGuGGCGUucGCCGGGCg -3'
miRNA:   3'- -CG-GUCUa------CAGCgGC-CUGCG--CGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 40869 0.67 0.454287
Target:  5'- uGCUGGc-GUCGCgGGcCGCGC-GGGCc -3'
miRNA:   3'- -CGGUCuaCAGCGgCCuGCGCGgCCCG- -5'
19338 5' -61.4 NC_004685.1 + 44234 0.66 0.463585
Target:  5'- gGCCGuGAUGcacaUCGGGCGCaGCUGGGUg -3'
miRNA:   3'- -CGGU-CUACagc-GGCCUGCG-CGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 23612 0.66 0.482476
Target:  5'- cCCGGGU-UUGCUGGACGCuCCGgcauGGCa -3'
miRNA:   3'- cGGUCUAcAGCGGCCUGCGcGGC----CCG- -5'
19338 5' -61.4 NC_004685.1 + 41745 0.66 0.501731
Target:  5'- cGCCAgGAUGUagGCauCGGugGCGuuGacGGCg -3'
miRNA:   3'- -CGGU-CUACAg-CG--GCCugCGCggC--CCG- -5'
19338 5' -61.4 NC_004685.1 + 25423 0.71 0.259845
Target:  5'- uCCuuGGUGUaGUCGGGCGCcaagaucggGCCGGGCu -3'
miRNA:   3'- cGGu-CUACAgCGGCCUGCG---------CGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 17662 0.7 0.272553
Target:  5'- gGCCaAGAUGUCGaCCGGGgcCGCcCCGGcGUc -3'
miRNA:   3'- -CGG-UCUACAGC-GGCCU--GCGcGGCC-CG- -5'
19338 5' -61.4 NC_004685.1 + 63234 0.7 0.299459
Target:  5'- cGCCAGggGU-GCCGGGC-UGuUCGGGCc -3'
miRNA:   3'- -CGGUCuaCAgCGGCCUGcGC-GGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 32920 0.69 0.320956
Target:  5'- cGCCA---GUCGaaGGGCGCGCagggauGGGCa -3'
miRNA:   3'- -CGGUcuaCAGCggCCUGCGCGg-----CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.