miRNA display CGI


Results 61 - 80 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19338 5' -61.4 NC_004685.1 + 37705 0.68 0.358504
Target:  5'- gGCUcggugaAGGUcGUCGCCGacggcacgaugaaGGCGCuGCUGGGCa -3'
miRNA:   3'- -CGG------UCUA-CAGCGGC-------------CUGCG-CGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 58347 0.73 0.188716
Target:  5'- uGUCGGGgcggGUCGCCGGuCGCGCaCGGc- -3'
miRNA:   3'- -CGGUCUa---CAGCGGCCuGCGCG-GCCcg -5'
19338 5' -61.4 NC_004685.1 + 19419 0.66 0.501731
Target:  5'- aGCCuGGUGUC-CCGcuacaaGCGCGCCGaacgccgugcguGGCg -3'
miRNA:   3'- -CGGuCUACAGcGGCc-----UGCGCGGC------------CCG- -5'
19338 5' -61.4 NC_004685.1 + 69423 0.68 0.359301
Target:  5'- cGCCGGAgca-GCUGGACGCgauugucaccGCCGGucGCa -3'
miRNA:   3'- -CGGUCUacagCGGCCUGCG----------CGGCC--CG- -5'
19338 5' -61.4 NC_004685.1 + 49668 0.68 0.362504
Target:  5'- cCCGGcggGUCGCCcgacucgcgcagacgGGugGCGaaccaCCGGGCg -3'
miRNA:   3'- cGGUCua-CAGCGG---------------CCugCGC-----GGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 30772 0.71 0.266138
Target:  5'- aGCCGGGUGaCuCCGGcuucgGCaaGCCGGGCg -3'
miRNA:   3'- -CGGUCUACaGcGGCC-----UGcgCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 9713 0.71 0.266138
Target:  5'- cGCUGGgcGcggUGaCCGGcCGUGCCGGGCa -3'
miRNA:   3'- -CGGUCuaCa--GC-GGCCuGCGCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 6738 0.66 0.463585
Target:  5'- cGUCAccc--CGCCGGAuCG-GCCGGGCa -3'
miRNA:   3'- -CGGUcuacaGCGGCCU-GCgCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 16275 0.66 0.463585
Target:  5'- aCCuGAUGgacCGCUGGaucgagucGCGCuccaaguacGCCGGGCa -3'
miRNA:   3'- cGGuCUACa--GCGGCC--------UGCG---------CGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 3540 0.67 0.454287
Target:  5'- aGCCucuuGGUcUUGCCGGugGCGaUCuGGCa -3'
miRNA:   3'- -CGGu---CUAcAGCGGCCugCGC-GGcCCG- -5'
19338 5' -61.4 NC_004685.1 + 626 0.66 0.470154
Target:  5'- aGCCGGAUGUUGgauucgaCGGACaucaGCucuccauuucggcgGCCGGGUc -3'
miRNA:   3'- -CGGUCUACAGCg------GCCUG----CG--------------CGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 1805 0.66 0.472983
Target:  5'- gGCCAGcgcGaCGCCGG-CGCGCCGcGa- -3'
miRNA:   3'- -CGGUCua-CaGCGGCCuGCGCGGC-Ccg -5'
19338 5' -61.4 NC_004685.1 + 65579 0.66 0.482476
Target:  5'- -aCAGGUccaUGCCGGACGUGUCGuuguuGGCg -3'
miRNA:   3'- cgGUCUAca-GCGGCCUGCGCGGC-----CCG- -5'
19338 5' -61.4 NC_004685.1 + 8099 0.66 0.49206
Target:  5'- gGCCGGGucggUGgucaacgCGCUGGcCGagGCCGGGUu -3'
miRNA:   3'- -CGGUCU----ACa------GCGGCCuGCg-CGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 59789 0.66 0.49206
Target:  5'- cCCAGGUGU-GCgGGACGUaCCcGGCc -3'
miRNA:   3'- cGGUCUACAgCGgCCUGCGcGGcCCG- -5'
19338 5' -61.4 NC_004685.1 + 2820 0.66 0.501731
Target:  5'- aGCguGgcGUCGagggUGGGgGCGuuGGGCa -3'
miRNA:   3'- -CGguCuaCAGCg---GCCUgCGCggCCCG- -5'
19338 5' -61.4 NC_004685.1 + 59741 0.66 0.511484
Target:  5'- cGCCgcGGAUGgcggUGCCGucgauuuugaGCGCGCCGuuGGCg -3'
miRNA:   3'- -CGG--UCUACa---GCGGCc---------UGCGCGGC--CCG- -5'
19338 5' -61.4 NC_004685.1 + 28904 0.69 0.351382
Target:  5'- cGCCGGAaccagGacuUCGacCCGGGC-CGCUGGGCg -3'
miRNA:   3'- -CGGUCUa----C---AGC--GGCCUGcGCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 40934 0.66 0.463585
Target:  5'- aGCCGGAggauucggugcUGUCGCCGuGGauucUGCGgCCGcgcGGCa -3'
miRNA:   3'- -CGGUCU-----------ACAGCGGC-CU----GCGC-GGC---CCG- -5'
19338 5' -61.4 NC_004685.1 + 32359 0.7 0.292545
Target:  5'- gGCgCAGAgGUgGCCGGcaucacCGCGCaGGGCa -3'
miRNA:   3'- -CG-GUCUaCAgCGGCCu-----GCGCGgCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.