miRNA display CGI


Results 101 - 116 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19338 5' -61.4 NC_004685.1 + 19419 0.66 0.501731
Target:  5'- aGCCuGGUGUC-CCGcuacaaGCGCGCCGaacgccgugcguGGCg -3'
miRNA:   3'- -CGGuCUACAGcGGCc-----UGCGCGGC------------CCG- -5'
19338 5' -61.4 NC_004685.1 + 68548 0.67 0.445089
Target:  5'- gGCCAguccGAUGcgggCGCCccGAUGCGUCGGGg -3'
miRNA:   3'- -CGGU----CUACa---GCGGc-CUGCGCGGCCCg -5'
19338 5' -61.4 NC_004685.1 + 4394 0.67 0.435998
Target:  5'- cGCCAGccuuguaGUCGCCGGuCGcCGCgCGGa- -3'
miRNA:   3'- -CGGUCua-----CAGCGGCCuGC-GCG-GCCcg -5'
19338 5' -61.4 NC_004685.1 + 18265 0.68 0.375511
Target:  5'- gGCCAGG-GUCGCCGaccauUGgGCgGGGUa -3'
miRNA:   3'- -CGGUCUaCAGCGGCcu---GCgCGgCCCG- -5'
19338 5' -61.4 NC_004685.1 + 6956 0.68 0.383799
Target:  5'- aGCCGGucaa-GCCcgcagccaucucGGACGCGCaUGGGCg -3'
miRNA:   3'- -CGGUCuacagCGG------------CCUGCGCG-GCCCG- -5'
19338 5' -61.4 NC_004685.1 + 3225 0.68 0.383799
Target:  5'- uGCCGGGgcgggGUCggggucggGCCGGACcaucgGCGCCGGu- -3'
miRNA:   3'- -CGGUCUa----CAG--------CGGCCUG-----CGCGGCCcg -5'
19338 5' -61.4 NC_004685.1 + 43277 0.68 0.391362
Target:  5'- gGCCAucaugucGAUGUUGUaucaGGAguCGCGCUGGGa -3'
miRNA:   3'- -CGGU-------CUACAGCGg---CCU--GCGCGGCCCg -5'
19338 5' -61.4 NC_004685.1 + 45668 0.68 0.39731
Target:  5'- cGCCAGAacgcccgacaGCUGGAgguCGgGCUGGGCa -3'
miRNA:   3'- -CGGUCUacag------CGGCCU---GCgCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 63256 0.68 0.400736
Target:  5'- cGCCAGuUGUCGCgCaGGCGCugGCCgaacGGGUu -3'
miRNA:   3'- -CGGUCuACAGCG-GcCUGCG--CGG----CCCG- -5'
19338 5' -61.4 NC_004685.1 + 45511 0.68 0.400736
Target:  5'- uGCCGGuGUGaUCGUCGG-CGUGCUGaGCg -3'
miRNA:   3'- -CGGUC-UAC-AGCGGCCuGCGCGGCcCG- -5'
19338 5' -61.4 NC_004685.1 + 2218 0.67 0.417259
Target:  5'- gGCCGGAuUGggUGCCGGGugccagaccugccUGCcgcccgGCCGGGCu -3'
miRNA:   3'- -CGGUCU-ACa-GCGGCCU-------------GCG------CGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 29172 0.67 0.418141
Target:  5'- cGCUgaGGAaaucaacaagcUGUCGCCGGcCGCGCaacaGGCc -3'
miRNA:   3'- -CGG--UCU-----------ACAGCGGCCuGCGCGgc--CCG- -5'
19338 5' -61.4 NC_004685.1 + 60346 0.67 0.427014
Target:  5'- gGCCuuc-GUCGCCGG-CGaGUCGGGUu -3'
miRNA:   3'- -CGGucuaCAGCGGCCuGCgCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 20089 0.67 0.435998
Target:  5'- gGCCAGcc--CGCCuacgaGGGCGCGCgGGuGCu -3'
miRNA:   3'- -CGGUCuacaGCGG-----CCUGCGCGgCC-CG- -5'
19338 5' -61.4 NC_004685.1 + 52297 0.67 0.435998
Target:  5'- aCCAGGUagaugGUCcccaGCCGGACGCcGUaguagCGGGCc -3'
miRNA:   3'- cGGUCUA-----CAG----CGGCCUGCG-CG-----GCCCG- -5'
19338 5' -61.4 NC_004685.1 + 2820 0.66 0.501731
Target:  5'- aGCguGgcGUCGagggUGGGgGCGuuGGGCa -3'
miRNA:   3'- -CGguCuaCAGCg---GCCUgCGCggCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.