miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19342 3' -55 NC_004685.1 + 8844 0.65 0.772603
Target:  5'- uGCGGCAGgcGGUCACCGCGGGuGACc-- -3'
miRNA:   3'- uUGUCGUC--CCGGUGGUGUUU-CUGcuc -5'
19342 3' -55 NC_004685.1 + 33580 0.65 0.772603
Target:  5'- -cCGGCGuGGUCACCgu-GGGACGAGg -3'
miRNA:   3'- uuGUCGUcCCGGUGGuguUUCUGCUC- -5'
19342 3' -55 NC_004685.1 + 12259 0.65 0.772603
Target:  5'- cGCAcGCAGGGCUACgCACucgacuuCGAGg -3'
miRNA:   3'- uUGU-CGUCCCGGUG-GUGuuucu--GCUC- -5'
19342 3' -55 NC_004685.1 + 30148 0.66 0.762417
Target:  5'- cGGCAGCcccGGCCAUCGCAGGuaucGCGGGa -3'
miRNA:   3'- -UUGUCGuc-CCGGUGGUGUUUc---UGCUC- -5'
19342 3' -55 NC_004685.1 + 44426 0.66 0.762417
Target:  5'- cGGCGGCgaguauguAGGGCUggGCCugGGGGACGc- -3'
miRNA:   3'- -UUGUCG--------UCCCGG--UGGugUUUCUGCuc -5'
19342 3' -55 NC_004685.1 + 23263 0.66 0.752095
Target:  5'- gAGCAcCGGGGCCACUGCGuagaacacGGCGAu -3'
miRNA:   3'- -UUGUcGUCCCGGUGGUGUuu------CUGCUc -5'
19342 3' -55 NC_004685.1 + 18264 0.66 0.752095
Target:  5'- --uGGcCAGGGUCGCCGaccauuGGGCGGGg -3'
miRNA:   3'- uugUC-GUCCCGGUGGUguu---UCUGCUC- -5'
19342 3' -55 NC_004685.1 + 51556 0.66 0.752095
Target:  5'- cGCGGUcGGuGCCACCGCccugaacucGGACGGGc -3'
miRNA:   3'- uUGUCGuCC-CGGUGGUGuu-------UCUGCUC- -5'
19342 3' -55 NC_004685.1 + 22590 0.66 0.752095
Target:  5'- -cCAGCAcGGUgACCACGgcGACGAu -3'
miRNA:   3'- uuGUCGUcCCGgUGGUGUuuCUGCUc -5'
19342 3' -55 NC_004685.1 + 47876 0.66 0.741651
Target:  5'- cGCAGCcGGGCCAacuCCGCGugguuGAUGAc -3'
miRNA:   3'- uUGUCGuCCCGGU---GGUGUuu---CUGCUc -5'
19342 3' -55 NC_004685.1 + 45051 0.66 0.741651
Target:  5'- aGGCGGUcaccuGGGGCaacccgaACCGCGAGGugGGc -3'
miRNA:   3'- -UUGUCG-----UCCCGg------UGGUGUUUCugCUc -5'
19342 3' -55 NC_004685.1 + 33368 0.66 0.731095
Target:  5'- --gAGCGGGaugcggaacuguGCCACCuCGAuGACGAGg -3'
miRNA:   3'- uugUCGUCC------------CGGUGGuGUUuCUGCUC- -5'
19342 3' -55 NC_004685.1 + 33323 0.66 0.731095
Target:  5'- --gGGCGcGGCgACCGCGAugaacauguuGGACGAGg -3'
miRNA:   3'- uugUCGUcCCGgUGGUGUU----------UCUGCUC- -5'
19342 3' -55 NC_004685.1 + 6027 0.66 0.731095
Target:  5'- cGCGGCGGGGUgAUguguuguggCAUcGAGACGAGu -3'
miRNA:   3'- uUGUCGUCCCGgUG---------GUGuUUCUGCUC- -5'
19342 3' -55 NC_004685.1 + 12491 0.66 0.731095
Target:  5'- cGCGGCcGGuGCCGCCaACGAGGuCGGc -3'
miRNA:   3'- uUGUCGuCC-CGGUGG-UGUUUCuGCUc -5'
19342 3' -55 NC_004685.1 + 17987 0.66 0.731095
Target:  5'- -cCGGCAGuGGCugccgcacCACCGCAucGGCGAc -3'
miRNA:   3'- uuGUCGUC-CCG--------GUGGUGUuuCUGCUc -5'
19342 3' -55 NC_004685.1 + 52251 0.66 0.731095
Target:  5'- -cCGGCAGGGCCGCCuuCAucG-CGcAGc -3'
miRNA:   3'- uuGUCGUCCCGGUGGu-GUuuCuGC-UC- -5'
19342 3' -55 NC_004685.1 + 68512 0.66 0.72044
Target:  5'- ---uGCGGGGCCGCCAgucCGAu-GCGGGg -3'
miRNA:   3'- uuguCGUCCCGGUGGU---GUUucUGCUC- -5'
19342 3' -55 NC_004685.1 + 36541 0.66 0.72044
Target:  5'- -uCAGCcuGGGCCugCACAccGGCGc- -3'
miRNA:   3'- uuGUCGu-CCCGGugGUGUuuCUGCuc -5'
19342 3' -55 NC_004685.1 + 48898 0.66 0.72044
Target:  5'- uGCcGCGGGGCUGCCgcGCAucGcCGAGa -3'
miRNA:   3'- uUGuCGUCCCGGUGG--UGUuuCuGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.