Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 19348 | 3' | -62.8 | NC_004685.1 | + | 4765 | 0.7 | 0.208697 |
|
Target: 5'- -uCGGCGcGCUGGccggauaCUGUGCCCGCAc -3' miRNA: 3'- cuGCCGU-CGACCug-----GGCACGGGCGUu -5' |
|||||||
| 19348 | 3' | -62.8 | NC_004685.1 | + | 20339 | 0.7 | 0.193361 |
|
Target: 5'- gGACGGCGGCgGcGAaCCGcUGCCCGCc- -3' miRNA: 3'- -CUGCCGUCGaC-CUgGGC-ACGGGCGuu -5' |
|||||||
| 19348 | 3' | -62.8 | NC_004685.1 | + | 35279 | 0.7 | 0.193361 |
|
Target: 5'- uGACGGUgAGCgUGGACCUGUGgCUGCc- -3' miRNA: 3'- -CUGCCG-UCG-ACCUGGGCACgGGCGuu -5' |
|||||||
| 19348 | 3' | -62.8 | NC_004685.1 | + | 65286 | 0.7 | 0.183692 |
|
Target: 5'- -gUGGCAGCUGcG-UCCGUGgCCGCAGu -3' miRNA: 3'- cuGCCGUCGAC-CuGGGCACgGGCGUU- -5' |
|||||||
| 19348 | 3' | -62.8 | NC_004685.1 | + | 3850 | 0.71 | 0.169991 |
|
Target: 5'- cGCGGCgAGgUGGGCCaGUGCCUGCu- -3' miRNA: 3'- cUGCCG-UCgACCUGGgCACGGGCGuu -5' |
|||||||
| 19348 | 3' | -62.8 | NC_004685.1 | + | 21375 | 0.71 | 0.165631 |
|
Target: 5'- uGGCaGGCGGCgGGugCCGUGUacaCCGCGGu -3' miRNA: 3'- -CUG-CCGUCGaCCugGGCACG---GGCGUU- -5' |
|||||||
| 19348 | 3' | -62.8 | NC_004685.1 | + | 19961 | 0.74 | 0.108392 |
|
Target: 5'- cGACGGguuCAGCUGGACgCUGgacaagGCCCGCGc -3' miRNA: 3'- -CUGCC---GUCGACCUG-GGCa-----CGGGCGUu -5' |
|||||||
| 19348 | 3' | -62.8 | NC_004685.1 | + | 21369 | 1.05 | 0.000404 |
|
Target: 5'- cGACGGCAGCUGGACCCGUGCCCGCAAc -3' miRNA: 3'- -CUGCCGUCGACCUGGGCACGGGCGUU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home