miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19348 5' -56.3 NC_004685.1 + 55379 0.66 0.713164
Target:  5'- gUCgAgGUcGCCGGUGUCCUcgGC-GCCGc -3'
miRNA:   3'- aAGaUgCA-CGGCCACAGGA--CGaUGGC- -5'
19348 5' -56.3 NC_004685.1 + 28315 0.66 0.70256
Target:  5'- --aUGCgGUGCCGGUGUCCUugaagaucaccaGC-GCCu -3'
miRNA:   3'- aagAUG-CACGGCCACAGGA------------CGaUGGc -5'
19348 5' -56.3 NC_004685.1 + 37093 0.66 0.681163
Target:  5'- -----gGUGCCGGUGUgCUGCgUGCgGu -3'
miRNA:   3'- aagaugCACGGCCACAgGACG-AUGgC- -5'
19348 5' -56.3 NC_004685.1 + 63861 0.67 0.659584
Target:  5'- -aCUGCGgGCCGG-GUCCUugcgguacuugcGCaGCCGg -3'
miRNA:   3'- aaGAUGCaCGGCCaCAGGA------------CGaUGGC- -5'
19348 5' -56.3 NC_004685.1 + 44911 0.67 0.648751
Target:  5'- gUUCUcgGUGCCGGgGUCCUcgacgaucgaGUUGCCGu -3'
miRNA:   3'- -AAGAugCACGGCCaCAGGA----------CGAUGGC- -5'
19348 5' -56.3 NC_004685.1 + 48313 0.67 0.637905
Target:  5'- -gUUGCGgGCaCGG-GUCCaGCUGCCGu -3'
miRNA:   3'- aaGAUGCaCG-GCCaCAGGaCGAUGGC- -5'
19348 5' -56.3 NC_004685.1 + 1538 0.68 0.59456
Target:  5'- gUUCgGCGaUGCCGGUGUUCgGUUuCCGa -3'
miRNA:   3'- -AAGaUGC-ACGGCCACAGGaCGAuGGC- -5'
19348 5' -56.3 NC_004685.1 + 23751 0.68 0.573038
Target:  5'- gUCgcCGUGUCGGgcagGUCCaGCuUGCCGg -3'
miRNA:   3'- aAGauGCACGGCCa---CAGGaCG-AUGGC- -5'
19348 5' -56.3 NC_004685.1 + 27256 0.69 0.489393
Target:  5'- gUCgUACGccGCCGGUGcCCacaccuuugUGCUGCCGa -3'
miRNA:   3'- aAG-AUGCa-CGGCCACaGG---------ACGAUGGC- -5'
19348 5' -56.3 NC_004685.1 + 35449 0.7 0.459482
Target:  5'- gUCgACGUgGCCGGgucguucuuuggUGaCCUGCUGCCGa -3'
miRNA:   3'- aAGaUGCA-CGGCC------------ACaGGACGAUGGC- -5'
19348 5' -56.3 NC_004685.1 + 21411 1.06 0.001684
Target:  5'- gUUCUACGUGCCGGUGUCCUGCUACCGc -3'
miRNA:   3'- -AAGAUGCACGGCCACAGGACGAUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.