miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19350 3' -55.9 NC_004685.1 + 38985 0.66 0.749481
Target:  5'- gCGGCGCguaccGCGACccCGAGCAGa--- -3'
miRNA:   3'- aGCCGUGa----CGCUGacGCUCGUCaugu -5'
19350 3' -55.9 NC_004685.1 + 202 0.66 0.749481
Target:  5'- uUCGGCGC-GaCGAgUGCGcgcuGguGUGCGg -3'
miRNA:   3'- -AGCCGUGaC-GCUgACGCu---CguCAUGU- -5'
19350 3' -55.9 NC_004685.1 + 36888 0.66 0.749481
Target:  5'- gUCGGC-C-GCGGCcGCGGGCAcGUcggGCAg -3'
miRNA:   3'- -AGCCGuGaCGCUGaCGCUCGU-CA---UGU- -5'
19350 3' -55.9 NC_004685.1 + 49934 0.66 0.743309
Target:  5'- -aGGCGCUGCGGgUGaacacCuccgaccacaucucgGAGCGGUACAu -3'
miRNA:   3'- agCCGUGACGCUgAC-----G---------------CUCGUCAUGU- -5'
19350 3' -55.9 NC_004685.1 + 14442 0.66 0.72876
Target:  5'- cUCGGCAuCUGgGACgccaGCGAGUcGUcCAg -3'
miRNA:   3'- -AGCCGU-GACgCUGa---CGCUCGuCAuGU- -5'
19350 3' -55.9 NC_004685.1 + 32294 0.66 0.72876
Target:  5'- gUGGCGCgGCGACcGC-AGCGGcccUGCAg -3'
miRNA:   3'- aGCCGUGaCGCUGaCGcUCGUC---AUGU- -5'
19350 3' -55.9 NC_004685.1 + 5712 0.66 0.718252
Target:  5'- gUCGGCGCaGaGcCUGUG-GCGGUACGa -3'
miRNA:   3'- -AGCCGUGaCgCuGACGCuCGUCAUGU- -5'
19350 3' -55.9 NC_004685.1 + 27135 0.66 0.707662
Target:  5'- cCGGCuCUgGCGugUGCGAcGUugacgAGUGCGa -3'
miRNA:   3'- aGCCGuGA-CGCugACGCU-CG-----UCAUGU- -5'
19350 3' -55.9 NC_004685.1 + 59360 0.67 0.686275
Target:  5'- cUCGGCGCUucauCGGCUGCucuucggugucGGGCAGcACGu -3'
miRNA:   3'- -AGCCGUGAc---GCUGACG-----------CUCGUCaUGU- -5'
19350 3' -55.9 NC_004685.1 + 68067 0.67 0.664685
Target:  5'- aUCGGCAacgGCGugUGCccGCAGcagGCGg -3'
miRNA:   3'- -AGCCGUga-CGCugACGcuCGUCa--UGU- -5'
19350 3' -55.9 NC_004685.1 + 67104 0.67 0.664685
Target:  5'- -aGGCugUcguuGCGACgcucggcGCGGcGCAGUGCAg -3'
miRNA:   3'- agCCGugA----CGCUGa------CGCU-CGUCAUGU- -5'
19350 3' -55.9 NC_004685.1 + 20998 0.67 0.65384
Target:  5'- cCGGUGCUgGUGAUcGCGcGGCGGUACc -3'
miRNA:   3'- aGCCGUGA-CGCUGaCGC-UCGUCAUGu -5'
19350 3' -55.9 NC_004685.1 + 37291 0.67 0.65384
Target:  5'- uUCGGguCgGCGGC--CGAGCAGUugGa -3'
miRNA:   3'- -AGCCguGaCGCUGacGCUCGUCAugU- -5'
19350 3' -55.9 NC_004685.1 + 37621 0.67 0.642976
Target:  5'- cUCGGCGCguuccccaGCGAUUcggucGCGGGCGGcgGCGg -3'
miRNA:   3'- -AGCCGUGa-------CGCUGA-----CGCUCGUCa-UGU- -5'
19350 3' -55.9 NC_004685.1 + 17094 0.67 0.632102
Target:  5'- aUCGGC-CUGguccacauCGACUGCGAcCuGUACAg -3'
miRNA:   3'- -AGCCGuGAC--------GCUGACGCUcGuCAUGU- -5'
19350 3' -55.9 NC_004685.1 + 2192 0.68 0.610364
Target:  5'- cCGcGCACcGCGAgUGCGAGCuGgcCGa -3'
miRNA:   3'- aGC-CGUGaCGCUgACGCUCGuCauGU- -5'
19350 3' -55.9 NC_004685.1 + 2777 0.68 0.599517
Target:  5'- gCGGCGC-GCGACggGCGgGGUAGUGg- -3'
miRNA:   3'- aGCCGUGaCGCUGa-CGC-UCGUCAUgu -5'
19350 3' -55.9 NC_004685.1 + 2832 0.68 0.599517
Target:  5'- aCGGCAaccGCGuCUGCGGGCcggccaacGUGCAg -3'
miRNA:   3'- aGCCGUga-CGCuGACGCUCGu-------CAUGU- -5'
19350 3' -55.9 NC_004685.1 + 14931 0.69 0.535295
Target:  5'- -aGGCGg-GCGACgcgGCGAugGCGGUGCGg -3'
miRNA:   3'- agCCGUgaCGCUGa--CGCU--CGUCAUGU- -5'
19350 3' -55.9 NC_004685.1 + 20361 0.69 0.535295
Target:  5'- gUCGGaGCUGCuGGCcgcgGcCGAGCAGUACc -3'
miRNA:   3'- -AGCCgUGACG-CUGa---C-GCUCGUCAUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.