miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19350 5' -58.1 NC_004685.1 + 21488 0.66 0.612045
Target:  5'- aGACAUACcGCgucacGCCGgagaCGGuGCUGCc -3'
miRNA:   3'- -CUGUGUGaCGa----CGGCa---GCCuCGACGa -5'
19350 5' -58.1 NC_004685.1 + 53702 0.66 0.586272
Target:  5'- gGACgACGCggaaccggaugggGUaGCCGUCGGAGCcgUGCg -3'
miRNA:   3'- -CUG-UGUGa------------CGaCGGCAGCCUCG--ACGa -5'
19350 5' -58.1 NC_004685.1 + 3281 0.66 0.579857
Target:  5'- aACAUcCUGgUGCCGUCGG-GCcGCc -3'
miRNA:   3'- cUGUGuGACgACGGCAGCCuCGaCGa -5'
19350 5' -58.1 NC_004685.1 + 8587 0.66 0.5692
Target:  5'- cGGCACGCUGCUGgaaacgaucaUCGUguucCGuGAGCUGUc -3'
miRNA:   3'- -CUGUGUGACGAC----------GGCA----GC-CUCGACGa -5'
19350 5' -58.1 NC_004685.1 + 15042 0.66 0.562829
Target:  5'- cGGCACGCUGCUcgguucgcaccGCgGUgacgagguggccggGGAGCUGCUc -3'
miRNA:   3'- -CUGUGUGACGA-----------CGgCAg-------------CCUCGACGA- -5'
19350 5' -58.1 NC_004685.1 + 6669 0.67 0.537554
Target:  5'- uGACGCGCUGCgcaagGCCGgggccaaGGAGCccgagguggGCg -3'
miRNA:   3'- -CUGUGUGACGa----CGGCag-----CCUCGa--------CGa -5'
19350 5' -58.1 NC_004685.1 + 561 0.67 0.527136
Target:  5'- cGACGCACcacuUGCUGuuG-CGGGuCUGCUu -3'
miRNA:   3'- -CUGUGUG----ACGACggCaGCCUcGACGA- -5'
19350 5' -58.1 NC_004685.1 + 59314 0.67 0.496364
Target:  5'- cGACGCGCUGC-GCacgGUCGGu-CUGCUc -3'
miRNA:   3'- -CUGUGUGACGaCGg--CAGCCucGACGA- -5'
19350 5' -58.1 NC_004685.1 + 41245 0.68 0.486287
Target:  5'- uGGCGCGCgcguucgGCUugGUCG-CGGAGUUGCUu -3'
miRNA:   3'- -CUGUGUGa------CGA--CGGCaGCCUCGACGA- -5'
19350 5' -58.1 NC_004685.1 + 9879 0.68 0.45666
Target:  5'- cGGCACACUGCUGgaCGacUCGG-GCgGCg -3'
miRNA:   3'- -CUGUGUGACGACg-GC--AGCCuCGaCGa -5'
19350 5' -58.1 NC_004685.1 + 57625 0.69 0.437456
Target:  5'- cGAUcaGCUGCuUGCCGUCGaccacuacauacGGGCUGCg -3'
miRNA:   3'- -CUGugUGACG-ACGGCAGC------------CUCGACGa -5'
19350 5' -58.1 NC_004685.1 + 22213 0.69 0.418725
Target:  5'- cGCAaGCUGgUcacGCUGUCGGAGCUGUUc -3'
miRNA:   3'- cUGUgUGACgA---CGGCAGCCUCGACGA- -5'
19350 5' -58.1 NC_004685.1 + 12810 0.7 0.382768
Target:  5'- cGGCGCACccaaggGCUaCUGagGGAGCUGCUg -3'
miRNA:   3'- -CUGUGUGa-----CGAcGGCagCCUCGACGA- -5'
19350 5' -58.1 NC_004685.1 + 52566 0.7 0.382768
Target:  5'- cGGC-CGCUcGUUGCCGUCGGcgccgaaccGCUGCg -3'
miRNA:   3'- -CUGuGUGA-CGACGGCAGCCu--------CGACGa -5'
19350 5' -58.1 NC_004685.1 + 63135 0.7 0.374105
Target:  5'- uGCGCAcCUGCUGCuUGUCGGugGGCUGg- -3'
miRNA:   3'- cUGUGU-GACGACG-GCAGCC--UCGACga -5'
19350 5' -58.1 NC_004685.1 + 40862 0.7 0.365576
Target:  5'- aGCGCGgUGCUGgCGUCGcGGGCcGCg -3'
miRNA:   3'- cUGUGUgACGACgGCAGC-CUCGaCGa -5'
19350 5' -58.1 NC_004685.1 + 46740 0.7 0.357182
Target:  5'- uGGCugAUACUGCUGCUGcUGGGGgUGCUg -3'
miRNA:   3'- -CUG--UGUGACGACGGCaGCCUCgACGA- -5'
19350 5' -58.1 NC_004685.1 + 27326 0.71 0.30227
Target:  5'- uACACGCcgGCca-CGUCGGAGCUGCc -3'
miRNA:   3'- cUGUGUGa-CGacgGCAGCCUCGACGa -5'
19350 5' -58.1 NC_004685.1 + 138 0.72 0.287824
Target:  5'- gGGCGCgGCUGCcggggugGCCGg-GGAGCUGCUc -3'
miRNA:   3'- -CUGUG-UGACGa------CGGCagCCUCGACGA- -5'
19350 5' -58.1 NC_004685.1 + 61294 0.72 0.260572
Target:  5'- aGGCACAg-GUUGCCGUCGGGGUacaGCUc -3'
miRNA:   3'- -CUGUGUgaCGACGGCAGCCUCGa--CGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.