miRNA display CGI


Results 1 - 20 of 104 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19355 3' -60.8 NC_004685.1 + 25423 0.66 0.521611
Target:  5'- uCCuuGGUGUagucGGGCGCCaagaucgggccGGGCUGCUGCg -3'
miRNA:   3'- -GGcuUCGCA----CCUGCGG-----------UCCGGCGGUG- -5'
19355 3' -60.8 NC_004685.1 + 41561 0.66 0.521611
Target:  5'- gUCGAcggcuGCgGUGGGCGCCcccacgguggAGGUCGgCGCg -3'
miRNA:   3'- -GGCUu----CG-CACCUGCGG----------UCCGGCgGUG- -5'
19355 3' -60.8 NC_004685.1 + 56176 0.66 0.520614
Target:  5'- gUCGggGCGgucccGGcgcugcaAUGUCAGGCCcauagGCCACu -3'
miRNA:   3'- -GGCuuCGCa----CC-------UGCGGUCCGG-----CGGUG- -5'
19355 3' -60.8 NC_004685.1 + 14020 0.66 0.511671
Target:  5'- aCGAGGCGgucGAguuCGCCAacGGCaGCCGCa -3'
miRNA:   3'- gGCUUCGCac-CU---GCGGU--CCGgCGGUG- -5'
19355 3' -60.8 NC_004685.1 + 32063 0.66 0.511671
Target:  5'- aCCGAAuCGcUGGggaacGCGCCGaGCgGCCACa -3'
miRNA:   3'- -GGCUUcGC-ACC-----UGCGGUcCGgCGGUG- -5'
19355 3' -60.8 NC_004685.1 + 43056 0.66 0.511671
Target:  5'- uCCGcGGCcUGGcugccccagauGCGCCAcacgucGGCCGCCGa -3'
miRNA:   3'- -GGCuUCGcACC-----------UGCGGU------CCGGCGGUg -5'
19355 3' -60.8 NC_004685.1 + 50636 0.66 0.511671
Target:  5'- uCCuu-GCGgucgGGAUGCUccgacGGuGCCGCCGCg -3'
miRNA:   3'- -GGcuuCGCa---CCUGCGG-----UC-CGGCGGUG- -5'
19355 3' -60.8 NC_004685.1 + 11157 0.66 0.511671
Target:  5'- aCGgcGgGUGGAUucguaCCAGGCCGCa-- -3'
miRNA:   3'- gGCuuCgCACCUGc----GGUCCGGCGgug -5'
19355 3' -60.8 NC_004685.1 + 44364 0.66 0.511671
Target:  5'- -aGAAGC-UGGGCaucCCuGGCUGCUACg -3'
miRNA:   3'- ggCUUCGcACCUGc--GGuCCGGCGGUG- -5'
19355 3' -60.8 NC_004685.1 + 68480 0.66 0.510681
Target:  5'- uCCGAuGCGgcccccUGGccccgccaguccgAUGCgGGGCCGCCAg -3'
miRNA:   3'- -GGCUuCGC------ACC-------------UGCGgUCCGGCGGUg -5'
19355 3' -60.8 NC_004685.1 + 47044 0.66 0.509692
Target:  5'- gCCGAAGCG-GcGACGCagcccaccgggauCAccccggcGGUCGCCACc -3'
miRNA:   3'- -GGCUUCGCaC-CUGCG-------------GU-------CCGGCGGUG- -5'
19355 3' -60.8 NC_004685.1 + 33800 0.66 0.508704
Target:  5'- gCCGAAcacCGUcucgauguuguacgGGGCGCU-GGCCGUCGCg -3'
miRNA:   3'- -GGCUUc--GCA--------------CCUGCGGuCCGGCGGUG- -5'
19355 3' -60.8 NC_004685.1 + 43187 0.66 0.50181
Target:  5'- aCCGuccuuGCGguacGGGCGCuuCAGGUCGCCc- -3'
miRNA:   3'- -GGCuu---CGCa---CCUGCG--GUCCGGCGGug -5'
19355 3' -60.8 NC_004685.1 + 41976 0.66 0.50181
Target:  5'- aCGGccGCGUGGAagaggugugGCCcGGCgGCCGCu -3'
miRNA:   3'- gGCUu-CGCACCUg--------CGGuCCGgCGGUG- -5'
19355 3' -60.8 NC_004685.1 + 12985 0.66 0.50181
Target:  5'- cCCGAuccccaugaccGGCGUGGGCcuuGCCcguGGCCagauggucgGCUACg -3'
miRNA:   3'- -GGCU-----------UCGCACCUG---CGGu--CCGG---------CGGUG- -5'
19355 3' -60.8 NC_004685.1 + 33922 0.66 0.50181
Target:  5'- aCCGgcGCuuuGUGGAgcUGCCAc-CCGCCACg -3'
miRNA:   3'- -GGCuuCG---CACCU--GCGGUccGGCGGUG- -5'
19355 3' -60.8 NC_004685.1 + 39775 0.66 0.500828
Target:  5'- uCCGcuucacGGCaUGGACgaacaGCCAGGCCucagccaGCCGCg -3'
miRNA:   3'- -GGCu-----UCGcACCUG-----CGGUCCGG-------CGGUG- -5'
19355 3' -60.8 NC_004685.1 + 53338 0.66 0.498868
Target:  5'- aCGAacuggggcaccuccAGCGcGG-CGCCGguGGCCGCgGCg -3'
miRNA:   3'- gGCU--------------UCGCaCCuGCGGU--CCGGCGgUG- -5'
19355 3' -60.8 NC_004685.1 + 41402 0.66 0.492033
Target:  5'- cCUGguGCGUGGA-GCgCAGGUcuuccagcucgCGCCGCu -3'
miRNA:   3'- -GGCuuCGCACCUgCG-GUCCG-----------GCGGUG- -5'
19355 3' -60.8 NC_004685.1 + 39543 0.66 0.49106
Target:  5'- gCGAuGGcCG-GGGCuGCCGGGCCgagugcgGCCGCg -3'
miRNA:   3'- gGCU-UC-GCaCCUG-CGGUCCGG-------CGGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.