miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19355 5' -55.4 NC_004685.1 + 25748 0.66 0.774659
Target:  5'- cGAUGGUGUacuGGUugGCGUUgUUGGUgGGCa -3'
miRNA:   3'- aCUACCACG---CCG--UGUAG-GACCAgUCG- -5'
19355 5' -55.4 NC_004685.1 + 63972 0.66 0.764641
Target:  5'- cGG-GGUGacuGGCACccgcGUCUcGGUCAGCc -3'
miRNA:   3'- aCUaCCACg--CCGUG----UAGGaCCAGUCG- -5'
19355 5' -55.4 NC_004685.1 + 57158 0.66 0.764641
Target:  5'- ---cGGUGCaGCAC-UCCaGGcgCAGCg -3'
miRNA:   3'- acuaCCACGcCGUGuAGGaCCa-GUCG- -5'
19355 5' -55.4 NC_004685.1 + 5687 0.66 0.754489
Target:  5'- cGGUGGUGCgaaugaucGGCGa---CgGGUCGGCg -3'
miRNA:   3'- aCUACCACG--------CCGUguagGaCCAGUCG- -5'
19355 5' -55.4 NC_004685.1 + 41770 0.66 0.754489
Target:  5'- uUGAcGGcGCGGUcgagcgacgcaGCAUUCUGGUCguugAGCu -3'
miRNA:   3'- -ACUaCCaCGCCG-----------UGUAGGACCAG----UCG- -5'
19355 5' -55.4 NC_004685.1 + 7542 0.66 0.744214
Target:  5'- uUGAcGGUGCagguGGC-CcgCCUGGUggcCAGCc -3'
miRNA:   3'- -ACUaCCACG----CCGuGuaGGACCA---GUCG- -5'
19355 5' -55.4 NC_004685.1 + 53858 0.66 0.744214
Target:  5'- cGAUGaUGCGGCcguugcGCAUCC-GGuagaUCGGCu -3'
miRNA:   3'- aCUACcACGCCG------UGUAGGaCC----AGUCG- -5'
19355 5' -55.4 NC_004685.1 + 60857 0.66 0.74111
Target:  5'- aGGU-GUGCGGCcuGC-UCCUcaugaggcccagcaGGUCGGCg -3'
miRNA:   3'- aCUAcCACGCCG--UGuAGGA--------------CCAGUCG- -5'
19355 5' -55.4 NC_004685.1 + 51699 0.66 0.733829
Target:  5'- cGGUGGUGCGGCAgccaCUGc-CGGCc -3'
miRNA:   3'- aCUACCACGCCGUguagGACcaGUCG- -5'
19355 5' -55.4 NC_004685.1 + 19012 0.66 0.723343
Target:  5'- cGAaGGUGUGGCGCAcgCUGG-CuGCc -3'
miRNA:   3'- aCUaCCACGCCGUGUagGACCaGuCG- -5'
19355 5' -55.4 NC_004685.1 + 37840 0.66 0.723343
Target:  5'- cGAcUGcUGCGGCGCAUagcCCUGcGgCAGCg -3'
miRNA:   3'- aCU-ACcACGCCGUGUA---GGAC-CaGUCG- -5'
19355 5' -55.4 NC_004685.1 + 59957 0.67 0.712768
Target:  5'- aUGGUGGUcugccCGGCACggCC-GGUCAccGCg -3'
miRNA:   3'- -ACUACCAc----GCCGUGuaGGaCCAGU--CG- -5'
19355 5' -55.4 NC_004685.1 + 24356 0.67 0.712768
Target:  5'- cGAUGGUGCgcgGGaucgGCAUCUgGGaCAGCu -3'
miRNA:   3'- aCUACCACG---CCg---UGUAGGaCCaGUCG- -5'
19355 5' -55.4 NC_004685.1 + 31078 0.67 0.702116
Target:  5'- cGAcaugGGUGCGGCGCucgacgCCgacuucGGcaUCAGCa -3'
miRNA:   3'- aCUa---CCACGCCGUGua----GGa-----CC--AGUCG- -5'
19355 5' -55.4 NC_004685.1 + 37998 0.67 0.701047
Target:  5'- cUGGUGGUGacgcagGGCGCGaccgcgggcacauUCCacuucgaugaugUGGUCGGCc -3'
miRNA:   3'- -ACUACCACg-----CCGUGU-------------AGG------------ACCAGUCG- -5'
19355 5' -55.4 NC_004685.1 + 61937 0.67 0.691397
Target:  5'- cGAUgcGGU-CGuGCACGUCCUGG-CuGCg -3'
miRNA:   3'- aCUA--CCAcGC-CGUGUAGGACCaGuCG- -5'
19355 5' -55.4 NC_004685.1 + 52017 0.67 0.691397
Target:  5'- cGccGGgGCGGCcccggucgACAUCUUGGcCAGCc -3'
miRNA:   3'- aCuaCCaCGCCG--------UGUAGGACCaGUCG- -5'
19355 5' -55.4 NC_004685.1 + 37532 0.67 0.680622
Target:  5'- aUGGUGGUGCccugcgucGGCACGcCCagcgGuGUCGGUg -3'
miRNA:   3'- -ACUACCACG--------CCGUGUaGGa---C-CAGUCG- -5'
19355 5' -55.4 NC_004685.1 + 40983 0.67 0.680622
Target:  5'- cUGGUGcucgGCGuGCGCAcUCCUGGU-GGCg -3'
miRNA:   3'- -ACUACca--CGC-CGUGU-AGGACCAgUCG- -5'
19355 5' -55.4 NC_004685.1 + 39390 0.67 0.680622
Target:  5'- ---cGG-GCGGCGCggCCaaUGGUgGGCa -3'
miRNA:   3'- acuaCCaCGCCGUGuaGG--ACCAgUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.