miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19360 3' -58.4 NC_004685.1 + 9808 0.66 0.604948
Target:  5'- -uGGcgcUGAGGGCAcGCUgCGCCGGGu-- -3'
miRNA:   3'- uuCCa--ACUCCUGU-CGA-GCGGCCCugc -5'
19360 3' -58.4 NC_004685.1 + 56140 0.66 0.580514
Target:  5'- cGGGUUGcGGACccucaAGaccgcggucggugcCUCGUCGGGGCGg -3'
miRNA:   3'- uUCCAACuCCUG-----UC--------------GAGCGGCCCUGC- -5'
19360 3' -58.4 NC_004685.1 + 37210 0.66 0.573116
Target:  5'- cAGGUU--GGGCAGC--GCCGGGGCc -3'
miRNA:   3'- uUCCAAcuCCUGUCGagCGGCCCUGc -5'
19360 3' -58.4 NC_004685.1 + 1600 0.66 0.573116
Target:  5'- uGAGGgcGAGGACcGCcUGCUGcGGGCa -3'
miRNA:   3'- -UUCCaaCUCCUGuCGaGCGGC-CCUGc -5'
19360 3' -58.4 NC_004685.1 + 65505 0.66 0.573116
Target:  5'- cGGGUaaccgucGGGCAgGCUCgGCCGGGugGu -3'
miRNA:   3'- uUCCAacu----CCUGU-CGAG-CGGCCCugC- -5'
19360 3' -58.4 NC_004685.1 + 1874 0.66 0.562586
Target:  5'- cAGGUUGAGGAUGGCgucggucagGCCGcGGcCGu -3'
miRNA:   3'- uUCCAACUCCUGUCGag-------CGGC-CCuGC- -5'
19360 3' -58.4 NC_004685.1 + 5419 0.67 0.500745
Target:  5'- -uGGccgagGAGGACAGcCUgGCCaGGGugGa -3'
miRNA:   3'- uuCCaa---CUCCUGUC-GAgCGG-CCCugC- -5'
19360 3' -58.4 NC_004685.1 + 45729 0.67 0.499739
Target:  5'- ----aUGAGcagaaacGGCAGCgggUCGCCGGGGCGg -3'
miRNA:   3'- uuccaACUC-------CUGUCG---AGCGGCCCUGC- -5'
19360 3' -58.4 NC_004685.1 + 7888 0.68 0.478811
Target:  5'- gGAGGUUGucggcGGGCAGCcgcaguggaaaaCGCUGGGGCc -3'
miRNA:   3'- -UUCCAACu----CCUGUCGa-----------GCGGCCCUGc -5'
19360 3' -58.4 NC_004685.1 + 62813 0.68 0.451599
Target:  5'- cGGGGgaaccGGGGcCGGCUgaGCCGGGGCa -3'
miRNA:   3'- -UUCCaa---CUCCuGUCGAg-CGGCCCUGc -5'
19360 3' -58.4 NC_004685.1 + 63096 0.69 0.432688
Target:  5'- cAGGUucgcUGGGGuCGcGCUCGUCGGuGGCGa -3'
miRNA:   3'- uUCCA----ACUCCuGU-CGAGCGGCC-CUGC- -5'
19360 3' -58.4 NC_004685.1 + 33116 0.71 0.337563
Target:  5'- cAGGUUGAucGGACccGCgUCGCCGGGcGCGc -3'
miRNA:   3'- uUCCAACU--CCUGu-CG-AGCGGCCC-UGC- -5'
19360 3' -58.4 NC_004685.1 + 54214 0.71 0.337563
Target:  5'- uAGGGUguucGGuuuccgaacaGgGGCUCGCCGGGACGg -3'
miRNA:   3'- -UUCCAacu-CC----------UgUCGAGCGGCCCUGC- -5'
19360 3' -58.4 NC_004685.1 + 15419 1.06 0.001038
Target:  5'- gAAGGUUGAGGACAGCUCGCCGGGACGu -3'
miRNA:   3'- -UUCCAACUCCUGUCGAGCGGCCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.