miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19360 5' -61.8 NC_004685.1 + 24678 0.66 0.482476
Target:  5'- cCUGUCCaucaacuucacCGGCGuugagacggugaAGCCCCUGaugaagcggcUUCGGAu -3'
miRNA:   3'- aGGCAGG-----------GCCGC------------UCGGGGAC----------AAGCCU- -5'
19360 5' -61.8 NC_004685.1 + 6820 0.66 0.472983
Target:  5'- cCUG-CUCGGCuaa-CCCUGUUCGGAa -3'
miRNA:   3'- aGGCaGGGCCGcucgGGGACAAGCCU- -5'
19360 5' -61.8 NC_004685.1 + 53957 0.66 0.454286
Target:  5'- cUUGUCCUGcGcCGAGCCCCaacUCGGGg -3'
miRNA:   3'- aGGCAGGGC-C-GCUCGGGGacaAGCCU- -5'
19360 5' -61.8 NC_004685.1 + 16002 0.67 0.417259
Target:  5'- cUCaUCuCCGGCGAcuGCCuguaagaCCUGUUCGGAa -3'
miRNA:   3'- aGGcAG-GGCCGCU--CGG-------GGACAAGCCU- -5'
19360 5' -61.8 NC_004685.1 + 43878 0.67 0.40938
Target:  5'- aUCGUCgCGGUcGGCCCCUGcaaccacgCGGGu -3'
miRNA:   3'- aGGCAGgGCCGcUCGGGGACaa------GCCU- -5'
19360 5' -61.8 NC_004685.1 + 44730 0.68 0.375511
Target:  5'- aCCGUgugcggcaCCGGCGuGCCCUggUGggUCGGAc -3'
miRNA:   3'- aGGCAg-------GGCCGCuCGGGG--ACa-AGCCU- -5'
19360 5' -61.8 NC_004685.1 + 5257 0.68 0.374689
Target:  5'- gCCG-CCCagacgcuGGCaGAGCacuauggcagCCCUGUUCGGAa -3'
miRNA:   3'- aGGCaGGG-------CCG-CUCG----------GGGACAAGCCU- -5'
19360 5' -61.8 NC_004685.1 + 66688 0.68 0.367344
Target:  5'- gUCgGUggaCCGGCGgaaAGCcagggaugCCCUGUUCGGAa -3'
miRNA:   3'- -AGgCAg--GGCCGC---UCG--------GGGACAAGCCU- -5'
19360 5' -61.8 NC_004685.1 + 19366 0.71 0.229625
Target:  5'- gUCgGcCCCGGC-AGCCCgcugaugaacugaCUGUUCGGAa -3'
miRNA:   3'- -AGgCaGGGCCGcUCGGG-------------GACAAGCCU- -5'
19360 5' -61.8 NC_004685.1 + 45808 0.71 0.219148
Target:  5'- -aCGUCUCGGCGucggccGGCCCCUcGUUCaGAa -3'
miRNA:   3'- agGCAGGGCCGC------UCGGGGA-CAAGcCU- -5'
19360 5' -61.8 NC_004685.1 + 15455 1.08 0.000408
Target:  5'- cUCCGUCCCGGCGAGCCCCUGUUCGGAa -3'
miRNA:   3'- -AGGCAGGGCCGCUCGGGGACAAGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.