miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19363 5' -54 NC_004685.1 + 2957 0.66 0.844736
Target:  5'- uGACgGUUg--GCCAGGGGUguucGgUUUCCg -3'
miRNA:   3'- -CUGgCAGaaaCGGUUCCCG----UgAGAGG- -5'
19363 5' -54 NC_004685.1 + 43090 0.66 0.844736
Target:  5'- cGGCCGcCgacUUGCCGccGGCGCgcagCUUCg -3'
miRNA:   3'- -CUGGCaGa--AACGGUucCCGUGa---GAGG- -5'
19363 5' -54 NC_004685.1 + 31807 0.66 0.836003
Target:  5'- cGACCGUCUc-GCCGAcGcGGCugGCUgacgCUCCg -3'
miRNA:   3'- -CUGGCAGAaaCGGUU-C-CCG--UGA----GAGG- -5'
19363 5' -54 NC_004685.1 + 64553 0.66 0.827057
Target:  5'- -cUCGUCguugUUGCCGAGcGCGgUCUCg -3'
miRNA:   3'- cuGGCAGa---AACGGUUCcCGUgAGAGg -5'
19363 5' -54 NC_004685.1 + 25707 0.66 0.808564
Target:  5'- cGGCagGUCUUUGCgCGGGGugggccaggcGCACUCgaugCCg -3'
miRNA:   3'- -CUGg-CAGAAACG-GUUCC----------CGUGAGa---GG- -5'
19363 5' -54 NC_004685.1 + 69586 0.66 0.808564
Target:  5'- uACCGcCUagcgGCCAAcGGGCGCgcgUCCa -3'
miRNA:   3'- cUGGCaGAaa--CGGUU-CCCGUGag-AGG- -5'
19363 5' -54 NC_004685.1 + 56157 0.66 0.808564
Target:  5'- aGACCGcggUCggUGCCucgucGGGGCGgUC-CCg -3'
miRNA:   3'- -CUGGC---AGaaACGGu----UCCCGUgAGaGG- -5'
19363 5' -54 NC_004685.1 + 41813 0.66 0.808564
Target:  5'- uGACCagcuUCgacgugggGCCGAGGGCgACcCUCCg -3'
miRNA:   3'- -CUGGc---AGaaa-----CGGUUCCCG-UGaGAGG- -5'
19363 5' -54 NC_004685.1 + 55194 0.67 0.789336
Target:  5'- -cCCGUCguaGCU-GGGGUACUCgUCCa -3'
miRNA:   3'- cuGGCAGaaaCGGuUCCCGUGAG-AGG- -5'
19363 5' -54 NC_004685.1 + 32144 0.67 0.789336
Target:  5'- cACCG-CUgggcgUGCCGacgcAGGGCACcaccaucggCUCCg -3'
miRNA:   3'- cUGGCaGAa----ACGGU----UCCCGUGa--------GAGG- -5'
19363 5' -54 NC_004685.1 + 21518 0.67 0.789336
Target:  5'- cGGCCG-CUUcgGCCAGggcgucauGGGCucgaUCUCCg -3'
miRNA:   3'- -CUGGCaGAAa-CGGUU--------CCCGug--AGAGG- -5'
19363 5' -54 NC_004685.1 + 4965 0.67 0.779473
Target:  5'- cACCGaCUUUGCCuauGGGGCGC-Cg-- -3'
miRNA:   3'- cUGGCaGAAACGGu--UCCCGUGaGagg -5'
19363 5' -54 NC_004685.1 + 50168 0.67 0.779473
Target:  5'- gGGCCGUCgucuuucaGCCAcggcugaaggucAGGGUGCagCUCCu -3'
miRNA:   3'- -CUGGCAGaaa-----CGGU------------UCCCGUGa-GAGG- -5'
19363 5' -54 NC_004685.1 + 27232 0.67 0.759303
Target:  5'- cACCGaCgccGCCAAGGGCugUCg-- -3'
miRNA:   3'- cUGGCaGaaaCGGUUCCCGugAGagg -5'
19363 5' -54 NC_004685.1 + 18942 0.67 0.749018
Target:  5'- uGGCCGcgCUgUGCCu--GGCGCUCgcgCCg -3'
miRNA:   3'- -CUGGCa-GAaACGGuucCCGUGAGa--GG- -5'
19363 5' -54 NC_004685.1 + 33806 0.68 0.728107
Target:  5'- cACCGUCUcgaugUUGUacGGGGCGCUggCCg -3'
miRNA:   3'- cUGGCAGA-----AACGguUCCCGUGAgaGG- -5'
19363 5' -54 NC_004685.1 + 26163 0.69 0.674358
Target:  5'- cGACCGUUggcguaCCAguAGGccGCACUCUCCc -3'
miRNA:   3'- -CUGGCAGaaac--GGU--UCC--CGUGAGAGG- -5'
19363 5' -54 NC_004685.1 + 30326 0.71 0.554347
Target:  5'- uGCCGUUUccGCCGAGGGUGgUCuggUCCg -3'
miRNA:   3'- cUGGCAGAaaCGGUUCCCGUgAG---AGG- -5'
19363 5' -54 NC_004685.1 + 33549 0.76 0.303236
Target:  5'- cGCUGgugCUUUGCCAAcGGGgACUCUUCa -3'
miRNA:   3'- cUGGCa--GAAACGGUU-CCCgUGAGAGG- -5'
19363 5' -54 NC_004685.1 + 12950 1.06 0.002634
Target:  5'- gGACCGUCUUUGCCAAGGGCACUCUCg -3'
miRNA:   3'- -CUGGCAGAAACGGUUCCCGUGAGAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.