miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19364 5' -61 NC_004685.1 + 9793 0.66 0.451149
Target:  5'- uUCGCCuaccgcGGCCGcCGCGGC-GAGGuGGu -3'
miRNA:   3'- uAGUGG------UCGGCuGCGCCGuCUCC-CUu -5'
19364 5' -61 NC_004685.1 + 11235 0.66 0.408532
Target:  5'- aAUCACCA-CCGAggacauccugcacgcCGCGGguGAGGuGAu -3'
miRNA:   3'- -UAGUGGUcGGCU---------------GCGCCguCUCC-CUu -5'
19364 5' -61 NC_004685.1 + 27061 0.67 0.36184
Target:  5'- gAUCACCAGCCcacccaugcuGGCgguguuguuGUGGUAGAGGGu- -3'
miRNA:   3'- -UAGUGGUCGG----------CUG---------CGCCGUCUCCCuu -5'
19364 5' -61 NC_004685.1 + 52662 0.68 0.345514
Target:  5'- --aACCAGCCGACGUGGaacGAcaccucGGGAAu -3'
miRNA:   3'- uagUGGUCGGCUGCGCCgu-CU------CCCUU- -5'
19364 5' -61 NC_004685.1 + 44107 0.68 0.329723
Target:  5'- cAUCAgCCacaaggagugGGCCGGCGCGGCGcAGGGc- -3'
miRNA:   3'- -UAGU-GG----------UCGGCUGCGCCGUcUCCCuu -5'
19364 5' -61 NC_004685.1 + 59915 0.68 0.329723
Target:  5'- cAUCGCCAGCUGACuGCGGgucuucuuGGGGGu- -3'
miRNA:   3'- -UAGUGGUCGGCUG-CGCCgu------CUCCCuu -5'
19364 5' -61 NC_004685.1 + 39386 0.68 0.307047
Target:  5'- -aCACCGGgCGGCGCGGCcaauGGuGGGc- -3'
miRNA:   3'- uaGUGGUCgGCUGCGCCG----UCuCCCuu -5'
19364 5' -61 NC_004685.1 + 44331 0.7 0.252471
Target:  5'- -gCACCcuGGUCGACGCGGUGGccgcgaucGGGGAGa -3'
miRNA:   3'- uaGUGG--UCGGCUGCGCCGUC--------UCCCUU- -5'
19364 5' -61 NC_004685.1 + 46808 0.71 0.21698
Target:  5'- cGUCAgCGGCCGAUGuCGGCAGccGGGc -3'
miRNA:   3'- -UAGUgGUCGGCUGC-GCCGUCucCCUu -5'
19364 5' -61 NC_004685.1 + 12348 1.03 0.000749
Target:  5'- gAUCACCAGCCGACGCGGCAGAGGGAAc -3'
miRNA:   3'- -UAGUGGUCGGCUGCGCCGUCUCCCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.