miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19367 3' -51.4 NC_004685.1 + 27246 0.66 0.94651
Target:  5'- aGGgCUGUcguGGGCGGucAGCCGAGgAGc -3'
miRNA:   3'- gCUgGACAu--CCUGCUu-UCGGCUUgUC- -5'
19367 3' -51.4 NC_004685.1 + 11861 0.66 0.94651
Target:  5'- cCGACCUGcucggcgAGG-CGAuuGUCGAGCu- -3'
miRNA:   3'- -GCUGGACa------UCCuGCUuuCGGCUUGuc -5'
19367 3' -51.4 NC_004685.1 + 67486 0.66 0.94651
Target:  5'- cCGGCCUGUGGGuCGAAuucGuCCGcGCc- -3'
miRNA:   3'- -GCUGGACAUCCuGCUUu--C-GGCuUGuc -5'
19367 3' -51.4 NC_004685.1 + 59899 0.66 0.94651
Target:  5'- gCGGCCgcgGUAGG-CGAAccccAGCCGcuCAc -3'
miRNA:   3'- -GCUGGa--CAUCCuGCUU----UCGGCuuGUc -5'
19367 3' -51.4 NC_004685.1 + 11126 0.66 0.94651
Target:  5'- uCGACCUG-GGcGCGguGGCCGAcgccaccaACGGg -3'
miRNA:   3'- -GCUGGACaUCcUGCuuUCGGCU--------UGUC- -5'
19367 3' -51.4 NC_004685.1 + 21571 0.66 0.942159
Target:  5'- aCGACCUGgaccugcguagcucGGGCGAcGGCUGGGuCGGc -3'
miRNA:   3'- -GCUGGACau------------CCUGCUuUCGGCUU-GUC- -5'
19367 3' -51.4 NC_004685.1 + 54764 0.66 0.941662
Target:  5'- uGACgCUGUAGuuGCGgcGGUCGAACAc -3'
miRNA:   3'- gCUG-GACAUCc-UGCuuUCGGCUUGUc -5'
19367 3' -51.4 NC_004685.1 + 22260 0.66 0.941662
Target:  5'- gGACCUGUccaAGGuGCGcuGGUCGGcggGCGGg -3'
miRNA:   3'- gCUGGACA---UCC-UGCuuUCGGCU---UGUC- -5'
19367 3' -51.4 NC_004685.1 + 19693 0.66 0.936538
Target:  5'- gGugCUGgcGGuccccuACGAAcAGCCGAcGCAGg -3'
miRNA:   3'- gCugGACauCC------UGCUU-UCGGCU-UGUC- -5'
19367 3' -51.4 NC_004685.1 + 65440 0.66 0.931135
Target:  5'- uGACCgcgcGGugGAGaagcuGGCCGAACGc -3'
miRNA:   3'- gCUGGacauCCugCUU-----UCGGCUUGUc -5'
19367 3' -51.4 NC_004685.1 + 30402 0.66 0.931135
Target:  5'- gCGACCaac-GGGCG--GGCCGAACAc -3'
miRNA:   3'- -GCUGGacauCCUGCuuUCGGCUUGUc -5'
19367 3' -51.4 NC_004685.1 + 3358 0.67 0.919492
Target:  5'- uGACCgGgcGGGCGGgcGGGUCGAGuCGGu -3'
miRNA:   3'- gCUGGaCauCCUGCU--UUCGGCUU-GUC- -5'
19367 3' -51.4 NC_004685.1 + 39048 0.67 0.91888
Target:  5'- uCGGCCggGUcaccGGGAaugccgggcacauCGAAcgGGCCGGGCAGa -3'
miRNA:   3'- -GCUGGa-CA----UCCU-------------GCUU--UCGGCUUGUC- -5'
19367 3' -51.4 NC_004685.1 + 33477 0.67 0.913252
Target:  5'- gGACCUGggcaccaccGG-UGAAGGCCGcACAGu -3'
miRNA:   3'- gCUGGACau-------CCuGCUUUCGGCuUGUC- -5'
19367 3' -51.4 NC_004685.1 + 12603 0.67 0.906734
Target:  5'- aCGcGCCgccgAGGuGCGcAAGGCCGGGCAGg -3'
miRNA:   3'- -GC-UGGaca-UCC-UGC-UUUCGGCUUGUC- -5'
19367 3' -51.4 NC_004685.1 + 14292 0.67 0.906734
Target:  5'- uGACCgaggGUGcGACGcuGGCCGAggcuGCGGg -3'
miRNA:   3'- gCUGGa---CAUcCUGCuuUCGGCU----UGUC- -5'
19367 3' -51.4 NC_004685.1 + 45201 0.68 0.88555
Target:  5'- gCGACCUGUAcGccGCGGccGAGCCGGgugauucgcaGCAGg -3'
miRNA:   3'- -GCUGGACAUcC--UGCU--UUCGGCU----------UGUC- -5'
19367 3' -51.4 NC_004685.1 + 5607 0.68 0.862011
Target:  5'- aGACCUGcGGGACGcGGGGgUGGugGGa -3'
miRNA:   3'- gCUGGACaUCCUGC-UUUCgGCUugUC- -5'
19367 3' -51.4 NC_004685.1 + 8396 0.68 0.862011
Target:  5'- cCGACCUGUcguGGGACGAGgcguuugagauGGCCcgcguagccguGGACGa -3'
miRNA:   3'- -GCUGGACA---UCCUGCUU-----------UCGG-----------CUUGUc -5'
19367 3' -51.4 NC_004685.1 + 7794 0.68 0.862011
Target:  5'- aCGGCCUGUGGcACucGGGGCCGGucaACGGg -3'
miRNA:   3'- -GCUGGACAUCcUGc-UUUCGGCU---UGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.