Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19367 | 3' | -51.4 | NC_004685.1 | + | 35292 | 0.76 | 0.458182 |
Target: 5'- gGACCUGUGGcugccgggcGACGAGcAGCCGGACu- -3' miRNA: 3'- gCUGGACAUC---------CUGCUU-UCGGCUUGuc -5' |
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19367 | 3' | -51.4 | NC_004685.1 | + | 11861 | 0.66 | 0.94651 |
Target: 5'- cCGACCUGcucggcgAGG-CGAuuGUCGAGCu- -3' miRNA: 3'- -GCUGGACa------UCCuGCUuuCGGCUUGuc -5' |
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19367 | 3' | -51.4 | NC_004685.1 | + | 27246 | 0.66 | 0.94651 |
Target: 5'- aGGgCUGUcguGGGCGGucAGCCGAGgAGc -3' miRNA: 3'- gCUgGACAu--CCUGCUu-UCGGCUUgUC- -5' |
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19367 | 3' | -51.4 | NC_004685.1 | + | 22260 | 0.66 | 0.941662 |
Target: 5'- gGACCUGUccaAGGuGCGcuGGUCGGcggGCGGg -3' miRNA: 3'- gCUGGACA---UCC-UGCuuUCGGCU---UGUC- -5' |
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19367 | 3' | -51.4 | NC_004685.1 | + | 19693 | 0.66 | 0.936538 |
Target: 5'- gGugCUGgcGGuccccuACGAAcAGCCGAcGCAGg -3' miRNA: 3'- gCugGACauCC------UGCUU-UCGGCU-UGUC- -5' |
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19367 | 3' | -51.4 | NC_004685.1 | + | 3358 | 0.67 | 0.919492 |
Target: 5'- uGACCgGgcGGGCGGgcGGGUCGAGuCGGu -3' miRNA: 3'- gCUGGaCauCCUGCU--UUCGGCUU-GUC- -5' |
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19367 | 3' | -51.4 | NC_004685.1 | + | 33477 | 0.67 | 0.913252 |
Target: 5'- gGACCUGggcaccaccGG-UGAAGGCCGcACAGu -3' miRNA: 3'- gCUGGACau-------CCuGCUUUCGGCuUGUC- -5' |
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19367 | 3' | -51.4 | NC_004685.1 | + | 45201 | 0.68 | 0.88555 |
Target: 5'- gCGACCUGUAcGccGCGGccGAGCCGGgugauucgcaGCAGg -3' miRNA: 3'- -GCUGGACAUcC--UGCU--UUCGGCU----------UGUC- -5' |
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19367 | 3' | -51.4 | NC_004685.1 | + | 13722 | 0.69 | 0.848554 |
Target: 5'- gGGCCUGUcacuggaccgcuggcAGGACGGcaucGCCGGGCu- -3' miRNA: 3'- gCUGGACA---------------UCCUGCUuu--CGGCUUGuc -5' |
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19367 | 3' | -51.4 | NC_004685.1 | + | 68265 | 0.7 | 0.789233 |
Target: 5'- gGACgcgcaUGaggAGGuguuCGGAAGCCGAACAGg -3' miRNA: 3'- gCUGg----ACa--UCCu---GCUUUCGGCUUGUC- -5' |
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19367 | 3' | -51.4 | NC_004685.1 | + | 24575 | 0.7 | 0.758927 |
Target: 5'- uGACCg--AGGACGgcGGacCCGAGCGGg -3' miRNA: 3'- gCUGGacaUCCUGCuuUC--GGCUUGUC- -5' |
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19367 | 3' | -51.4 | NC_004685.1 | + | 6035 | 0.7 | 0.758927 |
Target: 5'- aCGACCUucAGGugGAGAaguaccCCGAGCGGu -3' miRNA: 3'- -GCUGGAcaUCCugCUUUc-----GGCUUGUC- -5' |
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19367 | 3' | -51.4 | NC_004685.1 | + | 39784 | 0.73 | 0.606913 |
Target: 5'- cCGACCUG-GGGACGAccGCCacgacGACAGu -3' miRNA: 3'- -GCUGGACaUCCUGCUuuCGGc----UUGUC- -5' |
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19367 | 3' | -51.4 | NC_004685.1 | + | 30402 | 0.66 | 0.931135 |
Target: 5'- gCGACCaac-GGGCG--GGCCGAACAc -3' miRNA: 3'- -GCUGGacauCCUGCuuUCGGCUUGUc -5' |
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19367 | 3' | -51.4 | NC_004685.1 | + | 65440 | 0.66 | 0.931135 |
Target: 5'- uGACCgcgcGGugGAGaagcuGGCCGAACGc -3' miRNA: 3'- gCUGGacauCCugCUU-----UCGGCUUGUc -5' |
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19367 | 3' | -51.4 | NC_004685.1 | + | 54764 | 0.66 | 0.941662 |
Target: 5'- uGACgCUGUAGuuGCGgcGGUCGAACAc -3' miRNA: 3'- gCUG-GACAUCc-UGCuuUCGGCUUGUc -5' |
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19367 | 3' | -51.4 | NC_004685.1 | + | 21571 | 0.66 | 0.942159 |
Target: 5'- aCGACCUGgaccugcguagcucGGGCGAcGGCUGGGuCGGc -3' miRNA: 3'- -GCUGGACau------------CCUGCUuUCGGCUU-GUC- -5' |
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19367 | 3' | -51.4 | NC_004685.1 | + | 11126 | 0.66 | 0.94651 |
Target: 5'- uCGACCUG-GGcGCGguGGCCGAcgccaccaACGGg -3' miRNA: 3'- -GCUGGACaUCcUGCuuUCGGCU--------UGUC- -5' |
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19367 | 3' | -51.4 | NC_004685.1 | + | 59899 | 0.66 | 0.94651 |
Target: 5'- gCGGCCgcgGUAGG-CGAAccccAGCCGcuCAc -3' miRNA: 3'- -GCUGGa--CAUCCuGCUU----UCGGCuuGUc -5' |
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19367 | 3' | -51.4 | NC_004685.1 | + | 11402 | 1.1 | 0.002982 |
Target: 5'- uCGACCUGUAGGACGAAAGCCGAACAGg -3' miRNA: 3'- -GCUGGACAUCCUGCUUUCGGCUUGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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