miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19367 5' -51.8 NC_004685.1 + 19149 0.66 0.934904
Target:  5'- uCGCUGuaUCUCGGCCgCggcuacaUCGGcGACCg -3'
miRNA:   3'- -GUGAC--AGAGUCGG-Gaca----AGCCuUUGG- -5'
19367 5' -51.8 NC_004685.1 + 45909 0.66 0.934904
Target:  5'- uCGCUGcgCUCGGCgCUGccCGGcAAGCUg -3'
miRNA:   3'- -GUGACa-GAGUCGgGACaaGCC-UUUGG- -5'
19367 5' -51.8 NC_004685.1 + 26856 0.66 0.923037
Target:  5'- cCGCcG-CUCAGCgcaaacagggcgaCCUGgcCGGGAGCCa -3'
miRNA:   3'- -GUGaCaGAGUCG-------------GGACaaGCCUUUGG- -5'
19367 5' -51.8 NC_004685.1 + 65707 0.66 0.917573
Target:  5'- gGCUGUCgUCGuGCCCg---CGGAcuucugGACCg -3'
miRNA:   3'- gUGACAG-AGU-CGGGacaaGCCU------UUGG- -5'
19367 5' -51.8 NC_004685.1 + 44800 0.66 0.904623
Target:  5'- aGCUGUUcuggCAGCCCa--UCGGAuauccAGCCa -3'
miRNA:   3'- gUGACAGa---GUCGGGacaAGCCU-----UUGG- -5'
19367 5' -51.8 NC_004685.1 + 40499 0.66 0.904623
Target:  5'- gCGCUG-CUCGGCCCgcuggcGUUCcu-GGCCg -3'
miRNA:   3'- -GUGACaGAGUCGGGa-----CAAGccuUUGG- -5'
19367 5' -51.8 NC_004685.1 + 66560 0.67 0.897735
Target:  5'- ---aGUCggCGGCCCUG--CGGAAGCg -3'
miRNA:   3'- gugaCAGa-GUCGGGACaaGCCUUUGg -5'
19367 5' -51.8 NC_004685.1 + 33422 0.67 0.887638
Target:  5'- gACUGUCacaguccaguuggUCAcugccacaacguucGCCUcccuugggUGUUCGGAAACCg -3'
miRNA:   3'- gUGACAG-------------AGU--------------CGGG--------ACAAGCCUUUGG- -5'
19367 5' -51.8 NC_004685.1 + 3354 0.68 0.824257
Target:  5'- ---cGUCUcCAGCgUcaauugggcgUGUUCGGAAACCg -3'
miRNA:   3'- gugaCAGA-GUCGgG----------ACAAGCCUUUGG- -5'
19367 5' -51.8 NC_004685.1 + 23250 0.69 0.799663
Target:  5'- aGCUGga-UGGCCUgaucgagccggugggUGUUCGGAAACCg -3'
miRNA:   3'- gUGACagaGUCGGG---------------ACAAGCCUUUGG- -5'
19367 5' -51.8 NC_004685.1 + 31378 0.69 0.795768
Target:  5'- -uCUGUCUggcucguaCGGCCCUGgcccuggaaacUUCGGuGACCg -3'
miRNA:   3'- guGACAGA--------GUCGGGAC-----------AAGCCuUUGG- -5'
19367 5' -51.8 NC_004685.1 + 62629 0.7 0.759552
Target:  5'- gGCUGUCgugUCGGCCCUGgcguugcgcagcgCGGcgagcAGACCg -3'
miRNA:   3'- gUGACAG---AGUCGGGACaa-----------GCC-----UUUGG- -5'
19367 5' -51.8 NC_004685.1 + 63068 0.7 0.744976
Target:  5'- gACUGgcuuuUCggaCGGCCCggcgGUUCGGGAACg -3'
miRNA:   3'- gUGAC-----AGa--GUCGGGa---CAAGCCUUUGg -5'
19367 5' -51.8 NC_004685.1 + 19026 0.7 0.723767
Target:  5'- aCGCUGg--CuGCCCUG-UCGGAgGGCCa -3'
miRNA:   3'- -GUGACagaGuCGGGACaAGCCU-UUGG- -5'
19367 5' -51.8 NC_004685.1 + 48571 0.7 0.722696
Target:  5'- gGCUGUC-CAGCUCcGUcuucucgUCGGAGGCUc -3'
miRNA:   3'- gUGACAGaGUCGGGaCA-------AGCCUUUGG- -5'
19367 5' -51.8 NC_004685.1 + 9647 0.71 0.713018
Target:  5'- aACUGggcCUcCAGUCgggUGUUCGGAAACCg -3'
miRNA:   3'- gUGACa--GA-GUCGGg--ACAAGCCUUUGG- -5'
19367 5' -51.8 NC_004685.1 + 47517 0.72 0.613995
Target:  5'- gGCUGUC-CGGCCCg--UCGaGAACCa -3'
miRNA:   3'- gUGACAGaGUCGGGacaAGCcUUUGG- -5'
19367 5' -51.8 NC_004685.1 + 1954 0.72 0.613995
Target:  5'- aACU---UCGGCCCgcaaaaacgggUGUUCGGAAACCg -3'
miRNA:   3'- gUGAcagAGUCGGG-----------ACAAGCCUUUGG- -5'
19367 5' -51.8 NC_004685.1 + 4505 0.73 0.591903
Target:  5'- cCGCagGUgaUUCuGgCCUGUUCGGAAACCg -3'
miRNA:   3'- -GUGa-CA--GAGuCgGGACAAGCCUUUGG- -5'
19367 5' -51.8 NC_004685.1 + 67399 0.73 0.548199
Target:  5'- ----aUUUCGG-CCUGUUCGGAAACCg -3'
miRNA:   3'- gugacAGAGUCgGGACAAGCCUUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.