miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19370 3' -58.1 NC_004685.1 + 50401 0.66 0.650213
Target:  5'- -gUGCCgUGACcagGCCGggGAGUAGgUCGGu -3'
miRNA:   3'- cgACGG-GCUG---UGGCuuCUCGUC-GGCU- -5'
19370 3' -58.1 NC_004685.1 + 55687 0.66 0.650213
Target:  5'- cGCUGgCCGGCACgGAcauGCAGCa-- -3'
miRNA:   3'- -CGACgGGCUGUGgCUucuCGUCGgcu -5'
19370 3' -58.1 NC_004685.1 + 60093 0.66 0.650213
Target:  5'- --cGCCCGA-ACCGAuGGGGCAGgaGAa -3'
miRNA:   3'- cgaCGGGCUgUGGCU-UCUCGUCggCU- -5'
19370 3' -58.1 NC_004685.1 + 40500 0.66 0.650213
Target:  5'- cGCUGCUCGGC-CCGcuGGcGUuccuGGCCGGa -3'
miRNA:   3'- -CGACGGGCUGuGGCuuCU-CG----UCGGCU- -5'
19370 3' -58.1 NC_004685.1 + 29399 0.66 0.650213
Target:  5'- uGCUGCuuuCCGGCGaaggcCUGGAGAGCAucaGCgCGAu -3'
miRNA:   3'- -CGACG---GGCUGU-----GGCUUCUCGU---CG-GCU- -5'
19370 3' -58.1 NC_004685.1 + 45676 0.66 0.650213
Target:  5'- --cGCCCGACAgCUGGAG-GUcgGGCUGGg -3'
miRNA:   3'- cgaCGGGCUGU-GGCUUCuCG--UCGGCU- -5'
19370 3' -58.1 NC_004685.1 + 63293 0.66 0.650213
Target:  5'- aGCagGCCCcGCACUuc-GGGCAGUCGAu -3'
miRNA:   3'- -CGa-CGGGcUGUGGcuuCUCGUCGGCU- -5'
19370 3' -58.1 NC_004685.1 + 26997 0.66 0.650213
Target:  5'- cGCUGCcugCCGACGgCGAcacgaccguAGCGGCUGAu -3'
miRNA:   3'- -CGACG---GGCUGUgGCUuc-------UCGUCGGCU- -5'
19370 3' -58.1 NC_004685.1 + 69283 0.66 0.650213
Target:  5'- --aGCUCGcCGCCGccuacGAGCAGCuCGAg -3'
miRNA:   3'- cgaCGGGCuGUGGCuu---CUCGUCG-GCU- -5'
19370 3' -58.1 NC_004685.1 + 24936 0.66 0.650213
Target:  5'- gGCgucggGUCCGAcCACC--AGGGCAcGCCGGu -3'
miRNA:   3'- -CGa----CGGGCU-GUGGcuUCUCGU-CGGCU- -5'
19370 3' -58.1 NC_004685.1 + 27315 0.66 0.649151
Target:  5'- uGCUGCCgaCGuacACGCCGGccacgucGGAGCuGCCa- -3'
miRNA:   3'- -CGACGG--GC---UGUGGCU-------UCUCGuCGGcu -5'
19370 3' -58.1 NC_004685.1 + 58822 0.66 0.649151
Target:  5'- aCUGCCCGACACCGcgccuuccAGCGcuuucuccaccucGUCGAu -3'
miRNA:   3'- cGACGGGCUGUGGCuuc-----UCGU-------------CGGCU- -5'
19370 3' -58.1 NC_004685.1 + 68434 0.66 0.649151
Target:  5'- cGCguagGUCCGAUGcggggccgccaguCCGAuGGGCGGCCGc -3'
miRNA:   3'- -CGa---CGGGCUGU-------------GGCUuCUCGUCGGCu -5'
19370 3' -58.1 NC_004685.1 + 24858 0.66 0.647027
Target:  5'- --cGCCCGGCGCaagcGGGGCaaguuccucuacacGGCCGAg -3'
miRNA:   3'- cgaCGGGCUGUGgcu-UCUCG--------------UCGGCU- -5'
19370 3' -58.1 NC_004685.1 + 11749 0.66 0.64384
Target:  5'- -gUGCCCGauggaGCGCCgcGAGGAGCugcacgcagccaucGCCGAg -3'
miRNA:   3'- cgACGGGC-----UGUGG--CUUCUCGu-------------CGGCU- -5'
19370 3' -58.1 NC_004685.1 + 52010 0.66 0.639588
Target:  5'- -gUG-CCGACGCCGggGcGGCcccGGUCGAc -3'
miRNA:   3'- cgACgGGCUGUGGCuuC-UCG---UCGGCU- -5'
19370 3' -58.1 NC_004685.1 + 36041 0.66 0.639588
Target:  5'- cGCaGCCgGAUGCCGuucucaccGGGGguGCCGu -3'
miRNA:   3'- -CGaCGGgCUGUGGCu-------UCUCguCGGCu -5'
19370 3' -58.1 NC_004685.1 + 16971 0.66 0.639588
Target:  5'- aCUGCCCGGcCGgCGAGGgugGGCAGaCCu- -3'
miRNA:   3'- cGACGGGCU-GUgGCUUC---UCGUC-GGcu -5'
19370 3' -58.1 NC_004685.1 + 35572 0.66 0.639588
Target:  5'- cCUGCCCG-CGCUccAGGG-GGCCGAa -3'
miRNA:   3'- cGACGGGCuGUGGcuUCUCgUCGGCU- -5'
19370 3' -58.1 NC_004685.1 + 31087 0.66 0.634272
Target:  5'- uGCggcGCUCGACGCCGAcuucggcaucagcaAGGGCcucgcaggcaucGCCGAg -3'
miRNA:   3'- -CGa--CGGGCUGUGGCU--------------UCUCGu-----------CGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.