miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19370 5' -53.4 NC_004685.1 + 1912 0.66 0.837165
Target:  5'- cGCUgCGGCCgcgGUUGGcgucagcggcgacGGGcguGGGCAACAa -3'
miRNA:   3'- -CGA-GUCGGa--CGACU-------------UCUu--CCCGUUGU- -5'
19370 5' -53.4 NC_004685.1 + 16172 0.66 0.832657
Target:  5'- -aUCGGCCUGCUucagaaguacgugcaGAaccucgccgAGAcGGGCGGCGu -3'
miRNA:   3'- cgAGUCGGACGA---------------CU---------UCUuCCCGUUGU- -5'
19370 5' -53.4 NC_004685.1 + 9876 0.66 0.829012
Target:  5'- gGC-CGGCacaCUGCUGGAcGAcucGGGCGGCGg -3'
miRNA:   3'- -CGaGUCG---GACGACUU-CUu--CCCGUUGU- -5'
19370 5' -53.4 NC_004685.1 + 20632 0.66 0.81975
Target:  5'- cGCaUCAGaCUGgaGGAGgcGGGCAGg- -3'
miRNA:   3'- -CG-AGUCgGACgaCUUCuuCCCGUUgu -5'
19370 5' -53.4 NC_004685.1 + 54847 0.66 0.810286
Target:  5'- aGCUCGGCCUGgUcGAGGu--GGCAGa- -3'
miRNA:   3'- -CGAGUCGGACgA-CUUCuucCCGUUgu -5'
19370 5' -53.4 NC_004685.1 + 38867 0.67 0.790793
Target:  5'- aCUgAGCCUGCUGAAccuuccacGGGuCAACGu -3'
miRNA:   3'- cGAgUCGGACGACUUcuu-----CCC-GUUGU- -5'
19370 5' -53.4 NC_004685.1 + 40490 0.67 0.770621
Target:  5'- aGCgCGGCCUGUUGcgcGGccGGCGACAg -3'
miRNA:   3'- -CGaGUCGGACGACuu-CUucCCGUUGU- -5'
19370 5' -53.4 NC_004685.1 + 34203 0.67 0.770621
Target:  5'- cCUCAGCa-GCUGAAGuGGuGGCAGgAg -3'
miRNA:   3'- cGAGUCGgaCGACUUCuUC-CCGUUgU- -5'
19370 5' -53.4 NC_004685.1 + 14130 0.67 0.760309
Target:  5'- -aUCAGCg-GCUGGAGcuGGGCGAg- -3'
miRNA:   3'- cgAGUCGgaCGACUUCuuCCCGUUgu -5'
19370 5' -53.4 NC_004685.1 + 39417 0.68 0.739293
Target:  5'- gGCUCGGCCUGUacacccaAGGcGGCAACGg -3'
miRNA:   3'- -CGAGUCGGACGacuuc--UUC-CCGUUGU- -5'
19370 5' -53.4 NC_004685.1 + 16017 0.68 0.728612
Target:  5'- uGgUCAacGUCgaGCUGAAGAAGGGCGcGCGc -3'
miRNA:   3'- -CgAGU--CGGa-CGACUUCUUCCCGU-UGU- -5'
19370 5' -53.4 NC_004685.1 + 3249 0.68 0.696025
Target:  5'- aGUcCGGCUacgugagcGCUGAGGAuguGGGCAACAu -3'
miRNA:   3'- -CGaGUCGGa-------CGACUUCUu--CCCGUUGU- -5'
19370 5' -53.4 NC_004685.1 + 16523 0.69 0.673962
Target:  5'- cGCUcCAGCCUGCgGccGAA-GGCGACc -3'
miRNA:   3'- -CGA-GUCGGACGaCuuCUUcCCGUUGu -5'
19370 5' -53.4 NC_004685.1 + 17791 0.69 0.640591
Target:  5'- cGCUCAgGCCacggUGCUGGucgAGgcGGGCAAg- -3'
miRNA:   3'- -CGAGU-CGG----ACGACU---UCuuCCCGUUgu -5'
19370 5' -53.4 NC_004685.1 + 794 0.69 0.640591
Target:  5'- aGCUCGGCUccucguUGagcaUGAAGu-GGGCAACGa -3'
miRNA:   3'- -CGAGUCGG------ACg---ACUUCuuCCCGUUGU- -5'
19370 5' -53.4 NC_004685.1 + 2612 0.7 0.629437
Target:  5'- cGCUCGGCCUGCUc------GGCAGCGa -3'
miRNA:   3'- -CGAGUCGGACGAcuucuucCCGUUGU- -5'
19370 5' -53.4 NC_004685.1 + 35576 0.7 0.607147
Target:  5'- cGCcCgAGCCggg-GGAGAAGGGCAACGu -3'
miRNA:   3'- -CGaG-UCGGacgaCUUCUUCCCGUUGU- -5'
19370 5' -53.4 NC_004685.1 + 56792 0.7 0.59603
Target:  5'- cUUCAGCCccGCUcGAcGAGGGCAGCAg -3'
miRNA:   3'- cGAGUCGGa-CGAcUUcUUCCCGUUGU- -5'
19370 5' -53.4 NC_004685.1 + 40918 0.7 0.59603
Target:  5'- aGCUCGGCCUGCUGGcgcagcuGAuccuGGGaGACc -3'
miRNA:   3'- -CGAGUCGGACGACUu------CUu---CCCgUUGu -5'
19370 5' -53.4 NC_004685.1 + 25140 0.71 0.519571
Target:  5'- aGCccCGGUCUGCUGGAGA--GGCAGCc -3'
miRNA:   3'- -CGa-GUCGGACGACUUCUucCCGUUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.