miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19374 3' -59 NC_004685.1 + 6508 0.66 0.520626
Target:  5'- --gUGCAcCCGCCCgagcCGGUGGu-CGACa -3'
miRNA:   3'- uugACGU-GGCGGGa---GCCACCucGUUG- -5'
19374 3' -59 NC_004685.1 + 33459 0.66 0.520626
Target:  5'- cGACUGgGCCGCCaCUUGGgaccuGGGCAc- -3'
miRNA:   3'- -UUGACgUGGCGG-GAGCCac---CUCGUug -5'
19374 3' -59 NC_004685.1 + 14714 0.66 0.520626
Target:  5'- cAACgGCGCgGCCCgugCGcUGGAGcCGGCa -3'
miRNA:   3'- -UUGaCGUGgCGGGa--GCcACCUC-GUUG- -5'
19374 3' -59 NC_004685.1 + 7142 0.66 0.51035
Target:  5'- cGCUGCACCacGUgUUCGGcGGGGUGGCc -3'
miRNA:   3'- uUGACGUGG--CGgGAGCCaCCUCGUUG- -5'
19374 3' -59 NC_004685.1 + 53358 0.66 0.504225
Target:  5'- gAGCgugGCACCGCCCgucaccagcgCGGgaugcccggcguacuUGGAGCGc- -3'
miRNA:   3'- -UUGa--CGUGGCGGGa---------GCC---------------ACCUCGUug -5'
19374 3' -59 NC_004685.1 + 33936 0.66 0.50016
Target:  5'- gAGCUGCcacCCGCCa-CGGUgcgccgcuucuGGGGCGGCg -3'
miRNA:   3'- -UUGACGu--GGCGGgaGCCA-----------CCUCGUUG- -5'
19374 3' -59 NC_004685.1 + 41566 0.67 0.490061
Target:  5'- cGGCUGCGgugggCGCCCccaCGGUGGAGguCGGCg -3'
miRNA:   3'- -UUGACGUg----GCGGGa--GCCACCUC--GUUG- -5'
19374 3' -59 NC_004685.1 + 21273 0.67 0.48705
Target:  5'- cAACgcgGCACCGCCCaacUgccagcaacagcugUGGUGGcGCGGCg -3'
miRNA:   3'- -UUGa--CGUGGCGGG---A--------------GCCACCuCGUUG- -5'
19374 3' -59 NC_004685.1 + 14316 0.67 0.483048
Target:  5'- aGGCUGCGgguaucgcugaguUCGCCgacgacgugguggCGGUGGAGCGGCu -3'
miRNA:   3'- -UUGACGU-------------GGCGGga-----------GCCACCUCGUUG- -5'
19374 3' -59 NC_004685.1 + 55148 0.68 0.431637
Target:  5'- -cCUGCG-CGCCCUCGG-GGGuacgcagauGCGGCa -3'
miRNA:   3'- uuGACGUgGCGGGAGCCaCCU---------CGUUG- -5'
19374 3' -59 NC_004685.1 + 49828 0.68 0.431637
Target:  5'- ---cGCACCGCaCCUCGGgggUGGAcaucaucucGCGGCc -3'
miRNA:   3'- uugaCGUGGCG-GGAGCC---ACCU---------CGUUG- -5'
19374 3' -59 NC_004685.1 + 33091 0.68 0.422298
Target:  5'- gAGC-GCACCGCCCagUUGGUGc-GCGACu -3'
miRNA:   3'- -UUGaCGUGGCGGG--AGCCACcuCGUUG- -5'
19374 3' -59 NC_004685.1 + 45933 0.69 0.348903
Target:  5'- aAGCUGgACCuGCCCgacacggcgacgcUGGUGGAGCAGg -3'
miRNA:   3'- -UUGACgUGG-CGGGa------------GCCACCUCGUUg -5'
19374 3' -59 NC_004685.1 + 58078 0.7 0.319586
Target:  5'- cGGCUGCgcuccacGCCGCCCUCGGcgaugUGaGGGCGu- -3'
miRNA:   3'- -UUGACG-------UGGCGGGAGCC-----AC-CUCGUug -5'
19374 3' -59 NC_004685.1 + 57904 0.7 0.312741
Target:  5'- --aUGCGCCGCgCCUCGGcgaUGGcugcguGCAGCu -3'
miRNA:   3'- uugACGUGGCG-GGAGCC---ACCu-----CGUUG- -5'
19374 3' -59 NC_004685.1 + 54697 0.71 0.262633
Target:  5'- ---aGCAgCGCCCUcCGGUGGAguuuuccgcuucaGCAGCg -3'
miRNA:   3'- uugaCGUgGCGGGA-GCCACCU-------------CGUUG- -5'
19374 3' -59 NC_004685.1 + 61909 0.73 0.188489
Target:  5'- cACUGCACuauuuCGCCCgCGGUGGGGCc-- -3'
miRNA:   3'- uUGACGUG-----GCGGGaGCCACCUCGuug -5'
19374 3' -59 NC_004685.1 + 9113 1.07 0.000673
Target:  5'- gAACUGCACCGCCCUCGGUGGAGCAACu -3'
miRNA:   3'- -UUGACGUGGCGGGAGCCACCUCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.