miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19383 5' -58.6 NC_004685.1 + 93 0.7 0.356693
Target:  5'- uGCCgGGGgccUGUUGGCgugGACGCCGuuGCu -3'
miRNA:   3'- cCGGgCCC---ACAACCGa--CUGUGGC--UGu -5'
19383 5' -58.6 NC_004685.1 + 3700 0.68 0.493603
Target:  5'- cGGCgCGGGUGUaucgcgccgaguacgGGCUGGCGCa-GCGc -3'
miRNA:   3'- -CCGgGCCCACAa--------------CCGACUGUGgcUGU- -5'
19383 5' -58.6 NC_004685.1 + 4002 0.67 0.54305
Target:  5'- cGGCCCGGuGUaGUcgacgGGCUGGCcuucGCgCGGCu -3'
miRNA:   3'- -CCGGGCC-CA-CAa----CCGACUG----UG-GCUGu -5'
19383 5' -58.6 NC_004685.1 + 4091 0.7 0.373243
Target:  5'- cGGCCCu-GUGgccGCUGAUGCCGACAu -3'
miRNA:   3'- -CCGGGccCACaacCGACUGUGGCUGU- -5'
19383 5' -58.6 NC_004685.1 + 5377 1.1 0.000566
Target:  5'- cGGCCCGGGUGUUGGCUGACACCGACAc -3'
miRNA:   3'- -CCGGGCCCACAACCGACUGUGGCUGU- -5'
19383 5' -58.6 NC_004685.1 + 5465 0.66 0.63724
Target:  5'- cGGCgCGGGUcauccGGCgcgguucGugGCCGACAu -3'
miRNA:   3'- -CCGgGCCCAcaa--CCGa------CugUGGCUGU- -5'
19383 5' -58.6 NC_004685.1 + 6698 0.66 0.595068
Target:  5'- aGCCCGaGGUGggcGGCacccUGACGgUGACGu -3'
miRNA:   3'- cCGGGC-CCACaa-CCG----ACUGUgGCUGU- -5'
19383 5' -58.6 NC_004685.1 + 8330 0.7 0.373243
Target:  5'- uGGagaagaCGGGUGUccaugcgcaggUGGUgGACACCGACAg -3'
miRNA:   3'- -CCgg----GCCCACA-----------ACCGaCUGUGGCUGU- -5'
19383 5' -58.6 NC_004685.1 + 8421 0.7 0.390306
Target:  5'- uGCCCGacGGUG-UGGUcGGCAUCGACGu -3'
miRNA:   3'- cCGGGC--CCACaACCGaCUGUGGCUGU- -5'
19383 5' -58.6 NC_004685.1 + 11714 0.67 0.563712
Target:  5'- -aCCCGGcUGUgcGCUGACACCGcGCAc -3'
miRNA:   3'- ccGGGCCcACAacCGACUGUGGC-UGU- -5'
19383 5' -58.6 NC_004685.1 + 13079 0.69 0.435126
Target:  5'- gGGCCauccGUGgaGGCagGACACCGACGa -3'
miRNA:   3'- -CCGGgcc-CACaaCCGa-CUGUGGCUGU- -5'
19383 5' -58.6 NC_004685.1 + 13687 0.66 0.626682
Target:  5'- uGGCCgCGGGUGc-GGC--GCACCuGCAa -3'
miRNA:   3'- -CCGG-GCCCACaaCCGacUGUGGcUGU- -5'
19383 5' -58.6 NC_004685.1 + 14697 0.66 0.626682
Target:  5'- uGCCCGaGGagGgcaaGCUGcACGCCGACAc -3'
miRNA:   3'- cCGGGC-CCa-Caac-CGAC-UGUGGCUGU- -5'
19383 5' -58.6 NC_004685.1 + 20109 0.67 0.54305
Target:  5'- cGCgCGGGUGcUGGC-GAUGCgCGGCGa -3'
miRNA:   3'- cCGgGCCCACaACCGaCUGUG-GCUGU- -5'
19383 5' -58.6 NC_004685.1 + 24920 0.68 0.492614
Target:  5'- aGGCCCGcgcGGUGUcGGCgucGGguCCGACc -3'
miRNA:   3'- -CCGGGC---CCACAaCCGa--CUguGGCUGu -5'
19383 5' -58.6 NC_004685.1 + 28053 0.67 0.54305
Target:  5'- aGGCgCGGGccaaGGCUGAggcugagguCGCCGACGc -3'
miRNA:   3'- -CCGgGCCCacaaCCGACU---------GUGGCUGU- -5'
19383 5' -58.6 NC_004685.1 + 30821 0.71 0.317615
Target:  5'- cGGUgaGGGUGUgggUGGCaccgcgGGCACCGACc -3'
miRNA:   3'- -CCGggCCCACA---ACCGa-----CUGUGGCUGu -5'
19383 5' -58.6 NC_004685.1 + 31075 0.68 0.463403
Target:  5'- cGGCgacaUGGGUGcgGcGCUcGACGCCGACu -3'
miRNA:   3'- -CCGg---GCCCACaaC-CGA-CUGUGGCUGu -5'
19383 5' -58.6 NC_004685.1 + 31441 0.68 0.492614
Target:  5'- uGGCCuCGccgauGGUGccggGGCcgagGACGCCGACGa -3'
miRNA:   3'- -CCGG-GC-----CCACaa--CCGa---CUGUGGCUGU- -5'
19383 5' -58.6 NC_004685.1 + 33774 0.67 0.522644
Target:  5'- cGUCgCGGGUGUcGGC-GACAgCGACc -3'
miRNA:   3'- cCGG-GCCCACAaCCGaCUGUgGCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.