miRNA display CGI


Results 21 - 40 of 66 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19384 3' -59.7 NC_004685.1 + 14015 0.67 0.519325
Target:  5'- gGcCAGC-GUCGCACCCUCGcaGCGcGGGa -3'
miRNA:   3'- gC-GUCGaCGGUGUGGGGGC--UGUuCCC- -5'
19384 3' -59.7 NC_004685.1 + 25928 0.67 0.518321
Target:  5'- gGCGGgUGCCcgacucgAUGCCCCCaguccgaGCGGGGGa -3'
miRNA:   3'- gCGUCgACGG-------UGUGGGGGc------UGUUCCC- -5'
19384 3' -59.7 NC_004685.1 + 9170 0.67 0.50932
Target:  5'- uGaCGGgUGUUcagguuccgaACACCCCCGACGaugauGGGGg -3'
miRNA:   3'- gC-GUCgACGG----------UGUGGGGGCUGU-----UCCC- -5'
19384 3' -59.7 NC_004685.1 + 4711 0.67 0.50932
Target:  5'- uGCGGCUacGCgAuCAUCCCgGcCGAGGGg -3'
miRNA:   3'- gCGUCGA--CGgU-GUGGGGgCuGUUCCC- -5'
19384 3' -59.7 NC_004685.1 + 16758 0.67 0.50932
Target:  5'- aGCAGCUGUccgaggcgauCACugCCaaGGCGcAGGGc -3'
miRNA:   3'- gCGUCGACG----------GUGugGGggCUGU-UCCC- -5'
19384 3' -59.7 NC_004685.1 + 41562 0.67 0.499398
Target:  5'- uCGaCGGCUGCgguggGCGCCCCCacgGugGAGGu -3'
miRNA:   3'- -GC-GUCGACGg----UGUGGGGG---CugUUCCc -5'
19384 3' -59.7 NC_004685.1 + 19637 0.67 0.499398
Target:  5'- aGgAGCUGCgCAagGCUCgUGACGAGGGc -3'
miRNA:   3'- gCgUCGACG-GUg-UGGGgGCUGUUCCC- -5'
19384 3' -59.7 NC_004685.1 + 61111 0.67 0.493486
Target:  5'- aGCAGCgUGCCgggcgGCACCcgaaacaggcgcagaCCCGACAccGGa -3'
miRNA:   3'- gCGUCG-ACGG-----UGUGG---------------GGGCUGUucCC- -5'
19384 3' -59.7 NC_004685.1 + 13145 0.67 0.489562
Target:  5'- aCGCGGaggGCCGCcuacgucgauaGCCCCCccuauGACAucguGGGGg -3'
miRNA:   3'- -GCGUCga-CGGUG-----------UGGGGG-----CUGU----UCCC- -5'
19384 3' -59.7 NC_004685.1 + 55657 0.67 0.486629
Target:  5'- uGCGGCUGCCGuuggcgaacucgacCGCCUcgucgCCGGaacCGAGGGu -3'
miRNA:   3'- gCGUCGACGGU--------------GUGGG-----GGCU---GUUCCC- -5'
19384 3' -59.7 NC_004685.1 + 8033 0.67 0.479818
Target:  5'- gGCgacgGGCUGUacguCACCCgCGACAgcuGGGGg -3'
miRNA:   3'- gCG----UCGACGgu--GUGGGgGCUGU---UCCC- -5'
19384 3' -59.7 NC_004685.1 + 48928 0.67 0.479818
Target:  5'- aGCGGCgucgacgGCCugGCCCuuGGagcGGGu -3'
miRNA:   3'- gCGUCGa------CGGugUGGGggCUguuCCC- -5'
19384 3' -59.7 NC_004685.1 + 43955 0.67 0.478849
Target:  5'- uCGguGCUGUCcuucuacaaccacGCACUCCCGcCGuGGGa -3'
miRNA:   3'- -GCguCGACGG-------------UGUGGGGGCuGUuCCC- -5'
19384 3' -59.7 NC_004685.1 + 56001 0.67 0.476913
Target:  5'- aGguGC-GCCGCACCcgcggccaguacgaCCCGGCGaugucggaAGGGa -3'
miRNA:   3'- gCguCGaCGGUGUGG--------------GGGCUGU--------UCCC- -5'
19384 3' -59.7 NC_004685.1 + 12192 0.68 0.459672
Target:  5'- uGUGGCagGCCACGCCgCCGGacuacuuCAAGGa -3'
miRNA:   3'- gCGUCGa-CGGUGUGGgGGCU-------GUUCCc -5'
19384 3' -59.7 NC_004685.1 + 26464 0.68 0.451176
Target:  5'- uGguGCUGCC-CGCCUCCacccAgAAGGGc -3'
miRNA:   3'- gCguCGACGGuGUGGGGGc---UgUUCCC- -5'
19384 3' -59.7 NC_004685.1 + 34945 0.68 0.43261
Target:  5'- uCGCAGUUGCCcuuCACCUUcagCGugGAGGu -3'
miRNA:   3'- -GCGUCGACGGu--GUGGGG---GCugUUCCc -5'
19384 3' -59.7 NC_004685.1 + 65129 0.68 0.43261
Target:  5'- aCGCGGCccgaaUGUCGCAaugauugacaUUCCCGACAGGGcGg -3'
miRNA:   3'- -GCGUCG-----ACGGUGU----------GGGGGCUGUUCC-C- -5'
19384 3' -59.7 NC_004685.1 + 47223 0.68 0.423496
Target:  5'- -cCAGCUcGCCGCGa-CCCGACGcgAGGGu -3'
miRNA:   3'- gcGUCGA-CGGUGUggGGGCUGU--UCCC- -5'
19384 3' -59.7 NC_004685.1 + 21383 0.69 0.405618
Target:  5'- gGCGGgUGCCguguACACCgCgGugAAGGGc -3'
miRNA:   3'- gCGUCgACGG----UGUGGgGgCugUUCCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.