miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19384 5' -55.8 NC_004685.1 + 55790 0.66 0.759855
Target:  5'- gGCuCGCc-UCGGUGCGGACGUUGGCc -3'
miRNA:   3'- aCG-GCGauGGCCGUGUUUGCAGUCGc -5'
19384 5' -55.8 NC_004685.1 + 8476 0.66 0.759855
Target:  5'- gGCCGC-GCUGGCcgagGCuGAGCGcCGGUGg -3'
miRNA:   3'- aCGGCGaUGGCCG----UG-UUUGCaGUCGC- -5'
19384 5' -55.8 NC_004685.1 + 2373 0.66 0.759855
Target:  5'- gGCCaGCguucgGCCaGCACGAGC-UUGGCGg -3'
miRNA:   3'- aCGG-CGa----UGGcCGUGUUUGcAGUCGC- -5'
19384 5' -55.8 NC_004685.1 + 39482 0.66 0.759855
Target:  5'- gGCCGCggcGCCcaGGCcgACGAGCGcgcuggucgCAGCGa -3'
miRNA:   3'- aCGGCGa--UGG--CCG--UGUUUGCa--------GUCGC- -5'
19384 5' -55.8 NC_004685.1 + 39572 0.66 0.757835
Target:  5'- gGCCGCgacacugcccccACCGGCguACGuuGCGaUCGGCGc -3'
miRNA:   3'- aCGGCGa-----------UGGCCG--UGUu-UGC-AGUCGC- -5'
19384 5' -55.8 NC_004685.1 + 21299 0.66 0.753782
Target:  5'- cGCgGCUcucgccagcaccuccACCGGCGC---UGUCGGCu -3'
miRNA:   3'- aCGgCGA---------------UGGCCGUGuuuGCAGUCGc -5'
19384 5' -55.8 NC_004685.1 + 36867 0.66 0.749709
Target:  5'- -aCCGCggcguCCGGCAacauCGUCGGCc -3'
miRNA:   3'- acGGCGau---GGCCGUguuuGCAGUCGc -5'
19384 5' -55.8 NC_004685.1 + 40970 0.66 0.749709
Target:  5'- gGCCGCgcggcaagAUCGGUucaaccuCGAAgGUCGGCa -3'
miRNA:   3'- aCGGCGa-------UGGCCGu------GUUUgCAGUCGc -5'
19384 5' -55.8 NC_004685.1 + 37527 0.66 0.749709
Target:  5'- aGCCGaUGgUGGUGCccuGCGUCGGCa -3'
miRNA:   3'- aCGGCgAUgGCCGUGuu-UGCAGUCGc -5'
19384 5' -55.8 NC_004685.1 + 13037 0.66 0.739448
Target:  5'- gGCgGCgUAUCGGCAgAcGCGUgGGCu -3'
miRNA:   3'- aCGgCG-AUGGCCGUgUuUGCAgUCGc -5'
19384 5' -55.8 NC_004685.1 + 34509 0.66 0.736349
Target:  5'- aGCCGgaGCCagaacgccuggcucGGCugGAGCGUacgCGGCa -3'
miRNA:   3'- aCGGCgaUGG--------------CCGugUUUGCA---GUCGc -5'
19384 5' -55.8 NC_004685.1 + 40607 0.66 0.729082
Target:  5'- gUGCCGaacGCCGccGCGCcAGCGgUCAGCa -3'
miRNA:   3'- -ACGGCga-UGGC--CGUGuUUGC-AGUCGc -5'
19384 5' -55.8 NC_004685.1 + 58966 0.66 0.729082
Target:  5'- aGCCGCaccACCGGC-CAGuuccAC-UCGGCGc -3'
miRNA:   3'- aCGGCGa--UGGCCGuGUU----UGcAGUCGC- -5'
19384 5' -55.8 NC_004685.1 + 4743 0.66 0.729082
Target:  5'- -uCCGUggUCGGCGCGcucGugGUCGGCGc -3'
miRNA:   3'- acGGCGauGGCCGUGU---UugCAGUCGC- -5'
19384 5' -55.8 NC_004685.1 + 28770 0.66 0.729082
Target:  5'- aGCUGC-GCCaGCAggcCGAGCGugUCAGCGa -3'
miRNA:   3'- aCGGCGaUGGcCGU---GUUUGC--AGUCGC- -5'
19384 5' -55.8 NC_004685.1 + 60218 0.66 0.729082
Target:  5'- cUGCCaaUcCCGGCACAcgAACGUCcacAGUGa -3'
miRNA:   3'- -ACGGcgAuGGCCGUGU--UUGCAG---UCGC- -5'
19384 5' -55.8 NC_004685.1 + 42358 0.66 0.729082
Target:  5'- gGCaGCUccgacgugGCCGGCGuguACGUCGGCa -3'
miRNA:   3'- aCGgCGA--------UGGCCGUguuUGCAGUCGc -5'
19384 5' -55.8 NC_004685.1 + 33172 0.66 0.718622
Target:  5'- gGUgGC-ACCGGC-CGGugGUgGGCGc -3'
miRNA:   3'- aCGgCGaUGGCCGuGUUugCAgUCGC- -5'
19384 5' -55.8 NC_004685.1 + 63867 0.66 0.718622
Target:  5'- gGCCGggucCUugCGGUACuuGCG-CAGCc -3'
miRNA:   3'- aCGGC----GAugGCCGUGuuUGCaGUCGc -5'
19384 5' -55.8 NC_004685.1 + 65515 0.66 0.718622
Target:  5'- gGCCGa-GCUGGCGgGcguCGUCGGCa -3'
miRNA:   3'- aCGGCgaUGGCCGUgUuu-GCAGUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.