miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19384 5' -55.8 NC_004685.1 + 4450 1.08 0.001255
Target:  5'- gUGCCGCUACCGGCACAAACGUCAGCGu -3'
miRNA:   3'- -ACGGCGAUGGCCGUGUUUGCAGUCGC- -5'
19384 5' -55.8 NC_004685.1 + 109 0.8 0.129074
Target:  5'- gGCCGCUaggcgguagcggcgACCGGCGCGGGCG-CGGCu -3'
miRNA:   3'- aCGGCGA--------------UGGCCGUGUUUGCaGUCGc -5'
19384 5' -55.8 NC_004685.1 + 17139 0.79 0.140882
Target:  5'- gGCCGCUGgaguuCCGGCugAAccugaugGCGUCGGCGu -3'
miRNA:   3'- aCGGCGAU-----GGCCGugUU-------UGCAGUCGC- -5'
19384 5' -55.8 NC_004685.1 + 16676 0.78 0.170676
Target:  5'- cGCCuGCUGCCGGUcauGGCGUCGGUGg -3'
miRNA:   3'- aCGG-CGAUGGCCGuguUUGCAGUCGC- -5'
19384 5' -55.8 NC_004685.1 + 41587 0.76 0.216443
Target:  5'- aGCUGCUGCgCGGCgaacgccugcuGCAGcucgGCGUCGGCGa -3'
miRNA:   3'- aCGGCGAUG-GCCG-----------UGUU----UGCAGUCGC- -5'
19384 5' -55.8 NC_004685.1 + 41434 0.75 0.272324
Target:  5'- cGCCGCUGCCGGUu--GACGgu-GCGg -3'
miRNA:   3'- aCGGCGAUGGCCGuguUUGCaguCGC- -5'
19384 5' -55.8 NC_004685.1 + 51407 0.74 0.293371
Target:  5'- cGCCGCUGuacCCcGCcCAAugGUCGGCGa -3'
miRNA:   3'- aCGGCGAU---GGcCGuGUUugCAGUCGC- -5'
19384 5' -55.8 NC_004685.1 + 33746 0.74 0.300664
Target:  5'- cGCCGCUGcCCGGCgagACGugguGCGUCGucGCGg -3'
miRNA:   3'- aCGGCGAU-GGCCG---UGUu---UGCAGU--CGC- -5'
19384 5' -55.8 NC_004685.1 + 1907 0.74 0.308095
Target:  5'- gUGcCCGCUG-CGGcCGCGguuGGCGUCAGCGg -3'
miRNA:   3'- -AC-GGCGAUgGCC-GUGU---UUGCAGUCGC- -5'
19384 5' -55.8 NC_004685.1 + 53873 0.73 0.331227
Target:  5'- uUGCCGUccgCGGguCAGugGUCAGCGa -3'
miRNA:   3'- -ACGGCGaugGCCguGUUugCAGUCGC- -5'
19384 5' -55.8 NC_004685.1 + 55681 0.73 0.331227
Target:  5'- gUGCgaCGCUgGCCGGCACGGACaugCAGCa -3'
miRNA:   3'- -ACG--GCGA-UGGCCGUGUUUGca-GUCGc -5'
19384 5' -55.8 NC_004685.1 + 53370 0.73 0.331227
Target:  5'- gGCCGCggcgaUGCUGGC-CAGcuCGUCGGCGg -3'
miRNA:   3'- aCGGCG-----AUGGCCGuGUUu-GCAGUCGC- -5'
19384 5' -55.8 NC_004685.1 + 14430 0.73 0.347345
Target:  5'- cGCCGCgaagcGCuCGGCAUcugGGACGcCAGCGa -3'
miRNA:   3'- aCGGCGa----UG-GCCGUG---UUUGCaGUCGC- -5'
19384 5' -55.8 NC_004685.1 + 29856 0.73 0.347345
Target:  5'- cGCCGUgaugucgGCCGGCAgCGGAuCGUCAGgGc -3'
miRNA:   3'- aCGGCGa------UGGCCGU-GUUU-GCAGUCgC- -5'
19384 5' -55.8 NC_004685.1 + 56934 0.73 0.355612
Target:  5'- aGCCGCUggccaugaugcGgCGGUACAcgcaGGCGUCGGUGa -3'
miRNA:   3'- aCGGCGA-----------UgGCCGUGU----UUGCAGUCGC- -5'
19384 5' -55.8 NC_004685.1 + 55342 0.72 0.381234
Target:  5'- aGCCGCUccACCGcCACcacguCGUCGGCGa -3'
miRNA:   3'- aCGGCGA--UGGCcGUGuuu--GCAGUCGC- -5'
19384 5' -55.8 NC_004685.1 + 16736 0.72 0.381234
Target:  5'- gUGCgGCUGuCCGGCGguGGCGugugaccaccgUCAGCGg -3'
miRNA:   3'- -ACGgCGAU-GGCCGUguUUGC-----------AGUCGC- -5'
19384 5' -55.8 NC_004685.1 + 14374 0.72 0.390044
Target:  5'- gGCCGCUgGCCGcaacuauuucgaGCACGAgcugcagcggcaGCGUCAGCu -3'
miRNA:   3'- aCGGCGA-UGGC------------CGUGUU------------UGCAGUCGc -5'
19384 5' -55.8 NC_004685.1 + 32404 0.72 0.390932
Target:  5'- gGCCGCcgacccgaacggacCCGGCACGAACaGUCcGCGg -3'
miRNA:   3'- aCGGCGau------------GGCCGUGUUUG-CAGuCGC- -5'
19384 5' -55.8 NC_004685.1 + 9866 0.72 0.398985
Target:  5'- aGCCGUcacggGCCGGCACAcugcugGACGacucgggCGGCGg -3'
miRNA:   3'- aCGGCGa----UGGCCGUGU------UUGCa------GUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.