miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19384 5' -55.8 NC_004685.1 + 50852 0.66 0.718622
Target:  5'- gUGCgCGcCUGCCuGUACAGccgcagcCGUCGGCGg -3'
miRNA:   3'- -ACG-GC-GAUGGcCGUGUUu------GCAGUCGC- -5'
19384 5' -55.8 NC_004685.1 + 52194 0.66 0.718622
Target:  5'- gGCCaCUGCCagacuggauGGUGCGcagauacucGGCGUCGGCGg -3'
miRNA:   3'- aCGGcGAUGG---------CCGUGU---------UUGCAGUCGC- -5'
19384 5' -55.8 NC_004685.1 + 8077 0.67 0.70808
Target:  5'- cGCUGCauCCGGCGCAucugauGGCcggGUCGGUGg -3'
miRNA:   3'- aCGGCGauGGCCGUGU------UUG---CAGUCGC- -5'
19384 5' -55.8 NC_004685.1 + 3801 0.67 0.70808
Target:  5'- cUGCCG-UGCUGGCucGCAucuCGUCGGgCGa -3'
miRNA:   3'- -ACGGCgAUGGCCG--UGUuu-GCAGUC-GC- -5'
19384 5' -55.8 NC_004685.1 + 4383 0.67 0.70808
Target:  5'- gGCCGCUguGCgagaacugCGGcCACGGACG-CAGCu -3'
miRNA:   3'- aCGGCGA--UG--------GCC-GUGUUUGCaGUCGc -5'
19384 5' -55.8 NC_004685.1 + 66778 0.67 0.697465
Target:  5'- cGCCGC-ACCGGCACuGGgGcCGGg- -3'
miRNA:   3'- aCGGCGaUGGCCGUGuUUgCaGUCgc -5'
19384 5' -55.8 NC_004685.1 + 62951 0.67 0.697465
Target:  5'- gGCCGau-CCGGCGgGguGACGUgAGUGa -3'
miRNA:   3'- aCGGCgauGGCCGUgU--UUGCAgUCGC- -5'
19384 5' -55.8 NC_004685.1 + 53733 0.67 0.697465
Target:  5'- aGCUGUgGCUGGC-CGAugG-CGGCGu -3'
miRNA:   3'- aCGGCGaUGGCCGuGUUugCaGUCGC- -5'
19384 5' -55.8 NC_004685.1 + 66670 0.67 0.697465
Target:  5'- uUGCC-C-ACCGGCGgGAuUGUCGGUGg -3'
miRNA:   3'- -ACGGcGaUGGCCGUgUUuGCAGUCGC- -5'
19384 5' -55.8 NC_004685.1 + 37616 0.67 0.697465
Target:  5'- gGCCGCU--CGGCGCGuuCccCAGCGa -3'
miRNA:   3'- aCGGCGAugGCCGUGUuuGcaGUCGC- -5'
19384 5' -55.8 NC_004685.1 + 63125 0.67 0.691066
Target:  5'- gUGCCgaGCUGCCaGCACcuccaggaucagcucGGcCGUCGGCGu -3'
miRNA:   3'- -ACGG--CGAUGGcCGUG---------------UUuGCAGUCGC- -5'
19384 5' -55.8 NC_004685.1 + 37491 0.67 0.686789
Target:  5'- aGCCGCcGCCGuaGCccGCGUaCGGCu -3'
miRNA:   3'- aCGGCGaUGGCcgUGuuUGCA-GUCGc -5'
19384 5' -55.8 NC_004685.1 + 31436 0.67 0.686789
Target:  5'- uUGCCGC--CCGGUACcGACacCGGCGg -3'
miRNA:   3'- -ACGGCGauGGCCGUGuUUGcaGUCGC- -5'
19384 5' -55.8 NC_004685.1 + 62378 0.67 0.686789
Target:  5'- aGCCGCUuCCaGCu----CGUCGGCGu -3'
miRNA:   3'- aCGGCGAuGGcCGuguuuGCAGUCGC- -5'
19384 5' -55.8 NC_004685.1 + 38519 0.67 0.676063
Target:  5'- cGCCcaggACCGGCGCGgcggcgAGCGUC-GCGa -3'
miRNA:   3'- aCGGcga-UGGCCGUGU------UUGCAGuCGC- -5'
19384 5' -55.8 NC_004685.1 + 34144 0.67 0.676063
Target:  5'- aGCUGCgcagcgAUCcGCGCAAGCG-CGGCGu -3'
miRNA:   3'- aCGGCGa-----UGGcCGUGUUUGCaGUCGC- -5'
19384 5' -55.8 NC_004685.1 + 48443 0.67 0.665296
Target:  5'- gGCaCGcCUGCCaGCACGAugGccgcgccgaUCAGCGc -3'
miRNA:   3'- aCG-GC-GAUGGcCGUGUUugC---------AGUCGC- -5'
19384 5' -55.8 NC_004685.1 + 41244 0.67 0.665296
Target:  5'- -aUCGCcAgCGGCGCGAucaucgccACGUCAGCa -3'
miRNA:   3'- acGGCGaUgGCCGUGUU--------UGCAGUCGc -5'
19384 5' -55.8 NC_004685.1 + 38287 0.67 0.665296
Target:  5'- aGCuCGUcuCCGGCAU---CGUCGGCGa -3'
miRNA:   3'- aCG-GCGauGGCCGUGuuuGCAGUCGC- -5'
19384 5' -55.8 NC_004685.1 + 21451 0.67 0.662059
Target:  5'- gGCgGCUACUGGCggccgguguucgacACGGGCGUCGagacauaccGCGu -3'
miRNA:   3'- aCGgCGAUGGCCG--------------UGUUUGCAGU---------CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.