miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19384 5' -55.8 NC_004685.1 + 109 0.8 0.129074
Target:  5'- gGCCGCUaggcgguagcggcgACCGGCGCGGGCG-CGGCu -3'
miRNA:   3'- aCGGCGA--------------UGGCCGUGUUUGCaGUCGc -5'
19384 5' -55.8 NC_004685.1 + 1613 0.69 0.53538
Target:  5'- cGCCuGCUGCgGGCACAcgccguugccgauGAUccagagcuuGUCAGCGu -3'
miRNA:   3'- aCGG-CGAUGgCCGUGU-------------UUG---------CAGUCGC- -5'
19384 5' -55.8 NC_004685.1 + 1907 0.74 0.308095
Target:  5'- gUGcCCGCUG-CGGcCGCGguuGGCGUCAGCGg -3'
miRNA:   3'- -AC-GGCGAUgGCC-GUGU---UUGCAGUCGC- -5'
19384 5' -55.8 NC_004685.1 + 2373 0.66 0.759855
Target:  5'- gGCCaGCguucgGCCaGCACGAGC-UUGGCGg -3'
miRNA:   3'- aCGG-CGa----UGGcCGUGUUUGcAGUCGC- -5'
19384 5' -55.8 NC_004685.1 + 2692 0.68 0.643682
Target:  5'- gGCCGCUgucgccgccaucACCGGCACcgugauGAugGggcCGGUGg -3'
miRNA:   3'- aCGGCGA------------UGGCCGUG------UUugCa--GUCGC- -5'
19384 5' -55.8 NC_004685.1 + 2821 0.69 0.568192
Target:  5'- cUGCCGCaucgaCGGCAaccGCGUCuGCGg -3'
miRNA:   3'- -ACGGCGaug--GCCGUguuUGCAGuCGC- -5'
19384 5' -55.8 NC_004685.1 + 3716 0.69 0.546954
Target:  5'- cGCCGaguacggGCUGGCGCAGcgccACGUCAcGCu -3'
miRNA:   3'- aCGGCga-----UGGCCGUGUU----UGCAGU-CGc -5'
19384 5' -55.8 NC_004685.1 + 3801 0.67 0.70808
Target:  5'- cUGCCG-UGCUGGCucGCAucuCGUCGGgCGa -3'
miRNA:   3'- -ACGGCgAUGGCCG--UGUuu-GCAGUC-GC- -5'
19384 5' -55.8 NC_004685.1 + 4383 0.67 0.70808
Target:  5'- gGCCGCUguGCgagaacugCGGcCACGGACG-CAGCu -3'
miRNA:   3'- aCGGCGA--UG--------GCC-GUGUUUGCaGUCGc -5'
19384 5' -55.8 NC_004685.1 + 4450 1.08 0.001255
Target:  5'- gUGCCGCUACCGGCACAAACGUCAGCGu -3'
miRNA:   3'- -ACGGCGAUGGCCGUGUUUGCAGUCGC- -5'
19384 5' -55.8 NC_004685.1 + 4743 0.66 0.729082
Target:  5'- -uCCGUggUCGGCGCGcucGugGUCGGCGc -3'
miRNA:   3'- acGGCGauGGCCGUGU---UugCAGUCGC- -5'
19384 5' -55.8 NC_004685.1 + 7003 0.68 0.589631
Target:  5'- aUGCgGCUACCcGCGC-GACGgucgCGGCa -3'
miRNA:   3'- -ACGgCGAUGGcCGUGuUUGCa---GUCGc -5'
19384 5' -55.8 NC_004685.1 + 8077 0.67 0.70808
Target:  5'- cGCUGCauCCGGCGCAucugauGGCcggGUCGGUGg -3'
miRNA:   3'- aCGGCGauGGCCGUGU------UUG---CAGUCGC- -5'
19384 5' -55.8 NC_004685.1 + 8414 0.68 0.599327
Target:  5'- cUGCgGCUGCCcgacgguguggucGGCAUcGACGUCGacGCGu -3'
miRNA:   3'- -ACGgCGAUGG-------------CCGUGuUUGCAGU--CGC- -5'
19384 5' -55.8 NC_004685.1 + 8476 0.66 0.759855
Target:  5'- gGCCGC-GCUGGCcgagGCuGAGCGcCGGUGg -3'
miRNA:   3'- aCGGCGaUGGCCG----UG-UUUGCaGUCGC- -5'
19384 5' -55.8 NC_004685.1 + 9866 0.72 0.398985
Target:  5'- aGCCGUcacggGCCGGCACAcugcugGACGacucgggCGGCGg -3'
miRNA:   3'- aCGGCGa----UGGCCGUGU------UUGCa------GUCGC- -5'
19384 5' -55.8 NC_004685.1 + 10536 0.68 0.643682
Target:  5'- cGCCGCgGCCGGgugGCuucgacAACGUgGGCGg -3'
miRNA:   3'- aCGGCGaUGGCCg--UGu-----UUGCAgUCGC- -5'
19384 5' -55.8 NC_004685.1 + 11382 0.68 0.600406
Target:  5'- cGCCGgagGCUGGCGCGAAuCGagcgccggguuUCGGCGg -3'
miRNA:   3'- aCGGCga-UGGCCGUGUUU-GC-----------AGUCGC- -5'
19384 5' -55.8 NC_004685.1 + 11524 0.69 0.546954
Target:  5'- cGgCGCagaCGGCGCucauGCGUCGGCGc -3'
miRNA:   3'- aCgGCGaugGCCGUGuu--UGCAGUCGC- -5'
19384 5' -55.8 NC_004685.1 + 11609 0.68 0.607965
Target:  5'- gGCCGCaccaUGCCacucguuugucgcgGGCACAcACG-CAGCGu -3'
miRNA:   3'- aCGGCG----AUGG--------------CCGUGUuUGCaGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.