miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19384 5' -55.8 NC_004685.1 + 67997 0.69 0.546954
Target:  5'- aGUCaaGCaGCCGGCACGuacACGUguGCGa -3'
miRNA:   3'- aCGG--CGaUGGCCGUGUu--UGCAguCGC- -5'
19384 5' -55.8 NC_004685.1 + 47947 0.71 0.445599
Target:  5'- gGCCGUcGCCGuGCAuCAcGCuGUCGGCGg -3'
miRNA:   3'- aCGGCGaUGGC-CGU-GUuUG-CAGUCGC- -5'
19384 5' -55.8 NC_004685.1 + 30188 0.71 0.445599
Target:  5'- cGCUGCgACCaGCGCGcuCGUCGGCc -3'
miRNA:   3'- aCGGCGaUGGcCGUGUuuGCAGUCGc -5'
19384 5' -55.8 NC_004685.1 + 32268 0.7 0.472995
Target:  5'- gGCCGCcGgUGGCGCGGGCGguccugguggcgCGGCGa -3'
miRNA:   3'- aCGGCGaUgGCCGUGUUUGCa-----------GUCGC- -5'
19384 5' -55.8 NC_004685.1 + 18919 0.7 0.474984
Target:  5'- cGCCGCga-CGGCGCGGGCGagaugCuGGCGg -3'
miRNA:   3'- aCGGCGaugGCCGUGUUUGCa----G-UCGC- -5'
19384 5' -55.8 NC_004685.1 + 69580 0.7 0.509412
Target:  5'- cGCCGCUACCgccuagcggccaacgGGCGC--GCGUCcacacgGGCGc -3'
miRNA:   3'- aCGGCGAUGG---------------CCGUGuuUGCAG------UCGC- -5'
19384 5' -55.8 NC_004685.1 + 20775 0.7 0.525975
Target:  5'- cGCCGCUAucUCGGCgaugcgcgGCAGcccCGUCGGCa -3'
miRNA:   3'- aCGGCGAU--GGCCG--------UGUUu--GCAGUCGc -5'
19384 5' -55.8 NC_004685.1 + 42201 0.7 0.525975
Target:  5'- aUGCCGcCUACCucaAC-GACGUCGGCGa -3'
miRNA:   3'- -ACGGC-GAUGGccgUGuUUGCAGUCGC- -5'
19384 5' -55.8 NC_004685.1 + 1613 0.69 0.53538
Target:  5'- cGCCuGCUGCgGGCACAcgccguugccgauGAUccagagcuuGUCAGCGu -3'
miRNA:   3'- aCGG-CGAUGgCCGUGU-------------UUG---------CAGUCGC- -5'
19384 5' -55.8 NC_004685.1 + 39455 0.71 0.427523
Target:  5'- gGCCGCgccuggguccaguuCCGGCAagaGGugGUCGGUGa -3'
miRNA:   3'- aCGGCGau------------GGCCGUg--UUugCAGUCGC- -5'
19384 5' -55.8 NC_004685.1 + 26590 0.72 0.417258
Target:  5'- aGCUGCgcGCCGGCGgCAa--GUCGGCGg -3'
miRNA:   3'- aCGGCGa-UGGCCGU-GUuugCAGUCGC- -5'
19384 5' -55.8 NC_004685.1 + 9866 0.72 0.398985
Target:  5'- aGCCGUcacggGCCGGCACAcugcugGACGacucgggCGGCGg -3'
miRNA:   3'- aCGGCGa----UGGCCGUGU------UUGCa------GUCGC- -5'
19384 5' -55.8 NC_004685.1 + 1907 0.74 0.308095
Target:  5'- gUGcCCGCUG-CGGcCGCGguuGGCGUCAGCGg -3'
miRNA:   3'- -AC-GGCGAUgGCC-GUGU---UUGCAGUCGC- -5'
19384 5' -55.8 NC_004685.1 + 53873 0.73 0.331227
Target:  5'- uUGCCGUccgCGGguCAGugGUCAGCGa -3'
miRNA:   3'- -ACGGCGaugGCCguGUUugCAGUCGC- -5'
19384 5' -55.8 NC_004685.1 + 55681 0.73 0.331227
Target:  5'- gUGCgaCGCUgGCCGGCACGGACaugCAGCa -3'
miRNA:   3'- -ACG--GCGA-UGGCCGUGUUUGca-GUCGc -5'
19384 5' -55.8 NC_004685.1 + 53370 0.73 0.331227
Target:  5'- gGCCGCggcgaUGCUGGC-CAGcuCGUCGGCGg -3'
miRNA:   3'- aCGGCG-----AUGGCCGuGUUu-GCAGUCGC- -5'
19384 5' -55.8 NC_004685.1 + 14430 0.73 0.347345
Target:  5'- cGCCGCgaagcGCuCGGCAUcugGGACGcCAGCGa -3'
miRNA:   3'- aCGGCGa----UG-GCCGUG---UUUGCaGUCGC- -5'
19384 5' -55.8 NC_004685.1 + 56934 0.73 0.355612
Target:  5'- aGCCGCUggccaugaugcGgCGGUACAcgcaGGCGUCGGUGa -3'
miRNA:   3'- aCGGCGA-----------UgGCCGUGU----UUGCAGUCGC- -5'
19384 5' -55.8 NC_004685.1 + 16736 0.72 0.381234
Target:  5'- gUGCgGCUGuCCGGCGguGGCGugugaccaccgUCAGCGg -3'
miRNA:   3'- -ACGgCGAU-GGCCGUguUUGC-----------AGUCGC- -5'
19384 5' -55.8 NC_004685.1 + 55342 0.72 0.381234
Target:  5'- aGCCGCUccACCGcCACcacguCGUCGGCGa -3'
miRNA:   3'- aCGGCGA--UGGCcGUGuuu--GCAGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.