miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19389 3' -60.9 NC_004685.1 + 57154 0.66 0.473576
Target:  5'- -cGCacgGUGCagcaCUCCAGGCgcagcgUGCACaGCGg -3'
miRNA:   3'- caCG---CACGg---GAGGUCCG------ACGUGaCGC- -5'
19389 3' -60.9 NC_004685.1 + 267 0.66 0.473576
Target:  5'- -cGCGUccaGCUgCUCCGGcgucauguGCUGCAUUGCGu -3'
miRNA:   3'- caCGCA---CGG-GAGGUC--------CGACGUGACGC- -5'
19389 3' -60.9 NC_004685.1 + 7683 0.66 0.463899
Target:  5'- ---aGUGCCaUUCAGGCUGCGCgUGUu -3'
miRNA:   3'- cacgCACGGgAGGUCCGACGUG-ACGc -5'
19389 3' -60.9 NC_004685.1 + 25690 0.66 0.444861
Target:  5'- -aGgGUuUCCUCCAGGCUGuCACgcucccacgGCGg -3'
miRNA:   3'- caCgCAcGGGAGGUCCGAC-GUGa--------CGC- -5'
19389 3' -60.9 NC_004685.1 + 48796 0.66 0.435507
Target:  5'- -cGCGgGCauagaCCUCCAGGCgaucagcgGCGCUGgCGu -3'
miRNA:   3'- caCGCaCG-----GGAGGUCCGa-------CGUGAC-GC- -5'
19389 3' -60.9 NC_004685.1 + 68380 0.66 0.416241
Target:  5'- uGUGCGUGCgCC-CCGGGUccgagugUGCGCcccggguccgaUGCGc -3'
miRNA:   3'- -CACGCACG-GGaGGUCCG-------ACGUG-----------ACGC- -5'
19389 3' -60.9 NC_004685.1 + 50395 0.67 0.399266
Target:  5'- cUGgGUGUCCUCaAGGUUGuCGCUGUu -3'
miRNA:   3'- cACgCACGGGAGgUCCGAC-GUGACGc -5'
19389 3' -60.9 NC_004685.1 + 50650 0.67 0.399266
Target:  5'- aGUGCGagugGCCCUCCgacaGGGCaGCcaGCgUGCGc -3'
miRNA:   3'- -CACGCa---CGGGAGG----UCCGaCG--UG-ACGC- -5'
19389 3' -60.9 NC_004685.1 + 7731 0.67 0.390512
Target:  5'- uGUGCGgcgagGCCCgcagCCAGGacgUGCACgaccGCa -3'
miRNA:   3'- -CACGCa----CGGGa---GGUCCg--ACGUGa---CGc -5'
19389 3' -60.9 NC_004685.1 + 31587 0.67 0.381884
Target:  5'- aUGCG-GCCCagCAGGUcuUGCAgCUGCu -3'
miRNA:   3'- cACGCaCGGGagGUCCG--ACGU-GACGc -5'
19389 3' -60.9 NC_004685.1 + 66578 0.68 0.332845
Target:  5'- -aGCGguugGCCCU-CGGGUUGCGCcacGCGa -3'
miRNA:   3'- caCGCa---CGGGAgGUCCGACGUGa--CGC- -5'
19389 3' -60.9 NC_004685.1 + 34586 0.68 0.317558
Target:  5'- -aGCGUGCCaaUCCAGGC-GCGCaUGUc -3'
miRNA:   3'- caCGCACGGg-AGGUCCGaCGUG-ACGc -5'
19389 3' -60.9 NC_004685.1 + 68332 0.7 0.249087
Target:  5'- uGUGCGUGCgCC-CCGGGUccgugugugcgUGCGCcGCGc -3'
miRNA:   3'- -CACGCACG-GGaGGUCCG-----------ACGUGaCGC- -5'
19389 3' -60.9 NC_004685.1 + 48021 0.71 0.231068
Target:  5'- -aGCGUGaCCUCCacgGGGCUGUACgGCc -3'
miRNA:   3'- caCGCACgGGAGG---UCCGACGUGaCGc -5'
19389 3' -60.9 NC_004685.1 + 2552 1.07 0.000452
Target:  5'- gGUGCGUGCCCUCCAGGCUGCACUGCGc -3'
miRNA:   3'- -CACGCACGGGAGGUCCGACGUGACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.