miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19389 5' -56.4 NC_004685.1 + 17626 0.69 0.546107
Target:  5'- -cCGCGACGACGcGCUcaccccCGAGGUGG-Cg -3'
miRNA:   3'- caGCGUUGCUGU-CGGa-----GCUCCACCaG- -5'
19389 5' -56.4 NC_004685.1 + 30353 0.69 0.535625
Target:  5'- -cCGCGccgcCGACAGCCUUGAGuccguuguacucGUGGUUg -3'
miRNA:   3'- caGCGUu---GCUGUCGGAGCUC------------CACCAG- -5'
19389 5' -56.4 NC_004685.1 + 56082 0.69 0.525213
Target:  5'- gGUUGCGACGGCGcucgauGuCCUCGGGGgucaGGUUg -3'
miRNA:   3'- -CAGCGUUGCUGU------C-GGAGCUCCa---CCAG- -5'
19389 5' -56.4 NC_004685.1 + 66563 0.69 0.514879
Target:  5'- --aGCGACGACGGCCUCacccAGGacGUCa -3'
miRNA:   3'- cagCGUUGCUGUCGGAGc---UCCacCAG- -5'
19389 5' -56.4 NC_004685.1 + 3454 0.7 0.494468
Target:  5'- cGUUGCGgcGCGGCAGCCaaguUUGAGGUucuGGUg -3'
miRNA:   3'- -CAGCGU--UGCUGUCGG----AGCUCCA---CCAg -5'
19389 5' -56.4 NC_004685.1 + 40041 0.7 0.445169
Target:  5'- -aCGCGcCGACAGCCUUGAGGg---- -3'
miRNA:   3'- caGCGUuGCUGUCGGAGCUCCaccag -5'
19389 5' -56.4 NC_004685.1 + 32726 0.71 0.43564
Target:  5'- uGUUGUAGuCGGCAGCCgagCcGGGUGGUg -3'
miRNA:   3'- -CAGCGUU-GCUGUCGGa--GcUCCACCAg -5'
19389 5' -56.4 NC_004685.1 + 3296 0.71 0.416942
Target:  5'- aUCGCAugGcUAcGCCUCGGGG-GGUUg -3'
miRNA:   3'- cAGCGUugCuGU-CGGAGCUCCaCCAG- -5'
19389 5' -56.4 NC_004685.1 + 51594 0.71 0.407778
Target:  5'- aGUUGauccGCGACAGCCggaacCGAucGGUGGUCa -3'
miRNA:   3'- -CAGCgu--UGCUGUCGGa----GCU--CCACCAG- -5'
19389 5' -56.4 NC_004685.1 + 20173 0.72 0.347298
Target:  5'- gGUCGaauACGGCuGCCcCGAGGUGGcCg -3'
miRNA:   3'- -CAGCgu-UGCUGuCGGaGCUCCACCaG- -5'
19389 5' -56.4 NC_004685.1 + 18458 0.73 0.339199
Target:  5'- aUgGCGucCGACAGUCUCGGcauGGUGGUCc -3'
miRNA:   3'- cAgCGUu-GCUGUCGGAGCU---CCACCAG- -5'
19389 5' -56.4 NC_004685.1 + 7789 0.73 0.315731
Target:  5'- -gCGCGACGGCcuguGGCaCUCGGGGccGGUCa -3'
miRNA:   3'- caGCGUUGCUG----UCG-GAGCUCCa-CCAG- -5'
19389 5' -56.4 NC_004685.1 + 18411 0.75 0.240256
Target:  5'- cUCGCAcaGCGAgGGUgUCGAGGUGGa- -3'
miRNA:   3'- cAGCGU--UGCUgUCGgAGCUCCACCag -5'
19389 5' -56.4 NC_004685.1 + 9793 0.75 0.228269
Target:  5'- uUCGCcuaccGCGGCcGCCgcggCGAGGUGGUCc -3'
miRNA:   3'- cAGCGu----UGCUGuCGGa---GCUCCACCAG- -5'
19389 5' -56.4 NC_004685.1 + 8156 0.76 0.222467
Target:  5'- aUCGU--CGACAGCCUgGGGGUGGcCa -3'
miRNA:   3'- cAGCGuuGCUGUCGGAgCUCCACCaG- -5'
19389 5' -56.4 NC_004685.1 + 2589 1.09 0.000955
Target:  5'- cGUCGCAACGACAGCCUCGAGGUGGUCu -3'
miRNA:   3'- -CAGCGUUGCUGUCGGAGCUCCACCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.