miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1939 3' -61 NC_001347.2 + 97179 0.66 0.838531
Target:  5'- aGCAUCUCCucgcccaucucgUCCUCGUCCaGCuCGUa -3'
miRNA:   3'- gCGUGGAGGuca---------GGGAGCAGG-CG-GCG- -5'
1939 3' -61 NC_001347.2 + 168093 0.66 0.835465
Target:  5'- aGCACCgugUCCAGUUCggUGUCggUGUCGCg -3'
miRNA:   3'- gCGUGG---AGGUCAGGgaGCAG--GCGGCG- -5'
1939 3' -61 NC_001347.2 + 191186 0.66 0.830037
Target:  5'- gCGcCGCCUCCuccaaccccgcaacgCCgCUCGgagcaCCGCCGCa -3'
miRNA:   3'- -GC-GUGGAGGuca------------GG-GAGCa----GGCGGCG- -5'
1939 3' -61 NC_001347.2 + 193151 0.66 0.828471
Target:  5'- uCGCGCCUUCc-UCCUcugccugggcacgcgCGUCgGCCGCg -3'
miRNA:   3'- -GCGUGGAGGucAGGGa--------------GCAGgCGGCG- -5'
1939 3' -61 NC_001347.2 + 208106 0.66 0.827687
Target:  5'- gCGCACCgacggcggagCCGcGUCgCUCG-CCGgCGCu -3'
miRNA:   3'- -GCGUGGa---------GGU-CAGgGAGCaGGCgGCG- -5'
1939 3' -61 NC_001347.2 + 118162 0.66 0.8269
Target:  5'- gCGCACCcggUCCAugagcacGUCCUcgCGccagcccCCGCCGCg -3'
miRNA:   3'- -GCGUGG---AGGU-------CAGGGa-GCa------GGCGGCG- -5'
1939 3' -61 NC_001347.2 + 143137 0.66 0.819754
Target:  5'- uGCACCgacUCCAuGUCUCUgG-CCGgCGCc -3'
miRNA:   3'- gCGUGG---AGGU-CAGGGAgCaGGCgGCG- -5'
1939 3' -61 NC_001347.2 + 78964 0.66 0.818149
Target:  5'- gGCcuACCUgCAGcucUCCUUCGgcgagaucguggCCGCCGCc -3'
miRNA:   3'- gCG--UGGAgGUC---AGGGAGCa-----------GGCGGCG- -5'
1939 3' -61 NC_001347.2 + 166604 0.66 0.811673
Target:  5'- uGUACCUCCAcGUacaC-CGUCaCGCCGUc -3'
miRNA:   3'- gCGUGGAGGU-CAgg-GaGCAG-GCGGCG- -5'
1939 3' -61 NC_001347.2 + 118024 0.66 0.811673
Target:  5'- cCGCGgCgaCGGUCCUUCGUCgaGCuCGCa -3'
miRNA:   3'- -GCGUgGagGUCAGGGAGCAGg-CG-GCG- -5'
1939 3' -61 NC_001347.2 + 169066 0.66 0.803451
Target:  5'- uCGCGCCUCCAacGUCUCggccagcacgCG-CUGCCuGCu -3'
miRNA:   3'- -GCGUGGAGGU--CAGGGa---------GCaGGCGG-CG- -5'
1939 3' -61 NC_001347.2 + 184790 0.66 0.802621
Target:  5'- uGCACUUCCAcgCCCagCGccgauuuUUCGCCGCa -3'
miRNA:   3'- gCGUGGAGGUcaGGGa-GC-------AGGCGGCG- -5'
1939 3' -61 NC_001347.2 + 190640 0.66 0.795094
Target:  5'- aGCGCaagUCCAacUCCaC-CGUCUGCCGCg -3'
miRNA:   3'- gCGUGg--AGGUc-AGG-GaGCAGGCGGCG- -5'
1939 3' -61 NC_001347.2 + 207668 0.67 0.786609
Target:  5'- gGCGCCUaaCGGUCCUUUGUgCG-CGCu -3'
miRNA:   3'- gCGUGGAg-GUCAGGGAGCAgGCgGCG- -5'
1939 3' -61 NC_001347.2 + 222068 0.67 0.784039
Target:  5'- uGCGCCgCCGGUCCCccccaaaucaugucUCuagaugCCGCCGg -3'
miRNA:   3'- gCGUGGaGGUCAGGG--------------AGca----GGCGGCg -5'
1939 3' -61 NC_001347.2 + 199008 0.67 0.778003
Target:  5'- cCGCAgCUCUucGUCCa--G-CCGCCGCa -3'
miRNA:   3'- -GCGUgGAGGu-CAGGgagCaGGCGGCG- -5'
1939 3' -61 NC_001347.2 + 38397 0.67 0.778003
Target:  5'- gGCgGCCUCC-GUCUC-CGUgCCGCuCGCc -3'
miRNA:   3'- gCG-UGGAGGuCAGGGaGCA-GGCG-GCG- -5'
1939 3' -61 NC_001347.2 + 82067 0.67 0.778003
Target:  5'- gCGCACCUcaaagaggcgugCCAGgacggCCUCGUC-GUCGCg -3'
miRNA:   3'- -GCGUGGA------------GGUCag---GGAGCAGgCGGCG- -5'
1939 3' -61 NC_001347.2 + 166100 0.67 0.774529
Target:  5'- gGCGCCUCCAagaacucgcGUaaggcgcgauccgCUUCGgccgCCGCCGCa -3'
miRNA:   3'- gCGUGGAGGU---------CAg------------GGAGCa---GGCGGCG- -5'
1939 3' -61 NC_001347.2 + 38179 0.67 0.769284
Target:  5'- gCGCGCggCaCGGUCCC-CGacgCCGCCGg -3'
miRNA:   3'- -GCGUGgaG-GUCAGGGaGCa--GGCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.