Results 1 - 20 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1939 | 3' | -61 | NC_001347.2 | + | 168093 | 0.66 | 0.835465 |
Target: 5'- aGCACCgugUCCAGUUCggUGUCggUGUCGCg -3' miRNA: 3'- gCGUGG---AGGUCAGGgaGCAG--GCGGCG- -5' |
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1939 | 3' | -61 | NC_001347.2 | + | 184790 | 0.66 | 0.802621 |
Target: 5'- uGCACUUCCAcgCCCagCGccgauuuUUCGCCGCa -3' miRNA: 3'- gCGUGGAGGUcaGGGa-GC-------AGGCGGCG- -5' |
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1939 | 3' | -61 | NC_001347.2 | + | 190640 | 0.66 | 0.795094 |
Target: 5'- aGCGCaagUCCAacUCCaC-CGUCUGCCGCg -3' miRNA: 3'- gCGUGg--AGGUc-AGG-GaGCAGGCGGCG- -5' |
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1939 | 3' | -61 | NC_001347.2 | + | 166604 | 0.66 | 0.811673 |
Target: 5'- uGUACCUCCAcGUacaC-CGUCaCGCCGUc -3' miRNA: 3'- gCGUGGAGGU-CAgg-GaGCAG-GCGGCG- -5' |
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1939 | 3' | -61 | NC_001347.2 | + | 169066 | 0.66 | 0.803451 |
Target: 5'- uCGCGCCUCCAacGUCUCggccagcacgCG-CUGCCuGCu -3' miRNA: 3'- -GCGUGGAGGU--CAGGGa---------GCaGGCGG-CG- -5' |
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1939 | 3' | -61 | NC_001347.2 | + | 118024 | 0.66 | 0.811673 |
Target: 5'- cCGCGgCgaCGGUCCUUCGUCgaGCuCGCa -3' miRNA: 3'- -GCGUgGagGUCAGGGAGCAGg-CG-GCG- -5' |
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1939 | 3' | -61 | NC_001347.2 | + | 78964 | 0.66 | 0.818149 |
Target: 5'- gGCcuACCUgCAGcucUCCUUCGgcgagaucguggCCGCCGCc -3' miRNA: 3'- gCG--UGGAgGUC---AGGGAGCa-----------GGCGGCG- -5' |
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1939 | 3' | -61 | NC_001347.2 | + | 143137 | 0.66 | 0.819754 |
Target: 5'- uGCACCgacUCCAuGUCUCUgG-CCGgCGCc -3' miRNA: 3'- gCGUGG---AGGU-CAGGGAgCaGGCgGCG- -5' |
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1939 | 3' | -61 | NC_001347.2 | + | 118162 | 0.66 | 0.8269 |
Target: 5'- gCGCACCcggUCCAugagcacGUCCUcgCGccagcccCCGCCGCg -3' miRNA: 3'- -GCGUGG---AGGU-------CAGGGa-GCa------GGCGGCG- -5' |
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1939 | 3' | -61 | NC_001347.2 | + | 208106 | 0.66 | 0.827687 |
Target: 5'- gCGCACCgacggcggagCCGcGUCgCUCG-CCGgCGCu -3' miRNA: 3'- -GCGUGGa---------GGU-CAGgGAGCaGGCgGCG- -5' |
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1939 | 3' | -61 | NC_001347.2 | + | 191186 | 0.66 | 0.830037 |
Target: 5'- gCGcCGCCUCCuccaaccccgcaacgCCgCUCGgagcaCCGCCGCa -3' miRNA: 3'- -GC-GUGGAGGuca------------GG-GAGCa----GGCGGCG- -5' |
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1939 | 3' | -61 | NC_001347.2 | + | 193151 | 0.66 | 0.828471 |
Target: 5'- uCGCGCCUUCc-UCCUcugccugggcacgcgCGUCgGCCGCg -3' miRNA: 3'- -GCGUGGAGGucAGGGa--------------GCAGgCGGCG- -5' |
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1939 | 3' | -61 | NC_001347.2 | + | 97179 | 0.66 | 0.838531 |
Target: 5'- aGCAUCUCCucgcccaucucgUCCUCGUCCaGCuCGUa -3' miRNA: 3'- gCGUGGAGGuca---------GGGAGCAGG-CG-GCG- -5' |
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1939 | 3' | -61 | NC_001347.2 | + | 38179 | 0.67 | 0.769284 |
Target: 5'- gCGCGCggCaCGGUCCC-CGacgCCGCCGg -3' miRNA: 3'- -GCGUGgaG-GUCAGGGaGCa--GGCGGCg -5' |
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1939 | 3' | -61 | NC_001347.2 | + | 166100 | 0.67 | 0.774529 |
Target: 5'- gGCGCCUCCAagaacucgcGUaaggcgcgauccgCUUCGgccgCCGCCGCa -3' miRNA: 3'- gCGUGGAGGU---------CAg------------GGAGCa---GGCGGCG- -5' |
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1939 | 3' | -61 | NC_001347.2 | + | 199008 | 0.67 | 0.778003 |
Target: 5'- cCGCAgCUCUucGUCCa--G-CCGCCGCa -3' miRNA: 3'- -GCGUgGAGGu-CAGGgagCaGGCGGCG- -5' |
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1939 | 3' | -61 | NC_001347.2 | + | 38397 | 0.67 | 0.778003 |
Target: 5'- gGCgGCCUCC-GUCUC-CGUgCCGCuCGCc -3' miRNA: 3'- gCG-UGGAGGuCAGGGaGCA-GGCG-GCG- -5' |
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1939 | 3' | -61 | NC_001347.2 | + | 82067 | 0.67 | 0.778003 |
Target: 5'- gCGCACCUcaaagaggcgugCCAGgacggCCUCGUC-GUCGCg -3' miRNA: 3'- -GCGUGGA------------GGUCag---GGAGCAGgCGGCG- -5' |
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1939 | 3' | -61 | NC_001347.2 | + | 222068 | 0.67 | 0.784039 |
Target: 5'- uGCGCCgCCGGUCCCccccaaaucaugucUCuagaugCCGCCGg -3' miRNA: 3'- gCGUGGaGGUCAGGG--------------AGca----GGCGGCg -5' |
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1939 | 3' | -61 | NC_001347.2 | + | 11801 | 0.67 | 0.760459 |
Target: 5'- gGCACCaugcgCCAGUCCUaucgcuacgCGUCUgggGCCGUu -3' miRNA: 3'- gCGUGGa----GGUCAGGGa--------GCAGG---CGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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