miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1939 3' -61 NC_001347.2 + 63239 0.67 0.769284
Target:  5'- aCGCcgGCCUCCGcggCCgCUgCGcCCGCCGUg -3'
miRNA:   3'- -GCG--UGGAGGUca-GG-GA-GCaGGCGGCG- -5'
1939 3' -61 NC_001347.2 + 41143 0.67 0.769284
Target:  5'- gGCuACC-CC-GUCCCcCGcgcggaaaUCCGCCGCg -3'
miRNA:   3'- gCG-UGGaGGuCAGGGaGC--------AGGCGGCG- -5'
1939 3' -61 NC_001347.2 + 68134 0.67 0.760459
Target:  5'- aCGCugUUCCuG-CCUUCG-CCGuuGCu -3'
miRNA:   3'- -GCGugGAGGuCaGGGAGCaGGCggCG- -5'
1939 3' -61 NC_001347.2 + 11801 0.67 0.760459
Target:  5'- gGCACCaugcgCCAGUCCUaucgcuacgCGUCUgggGCCGUu -3'
miRNA:   3'- gCGUGGa----GGUCAGGGa--------GCAGG---CGGCG- -5'
1939 3' -61 NC_001347.2 + 178804 0.67 0.74252
Target:  5'- cCGCuGCCgccgCCAccCCUUCGuccUCCGCCGCc -3'
miRNA:   3'- -GCG-UGGa---GGUcaGGGAGC---AGGCGGCG- -5'
1939 3' -61 NC_001347.2 + 116683 0.67 0.74252
Target:  5'- uCGcCACCUCCGGcgcugUCCUCGcgacgugagggaUCCcaGCCGCu -3'
miRNA:   3'- -GC-GUGGAGGUCa----GGGAGC------------AGG--CGGCG- -5'
1939 3' -61 NC_001347.2 + 16217 0.68 0.733421
Target:  5'- aCGCGCCUCUAcaucuacgaaCCCUCGcaagagauUCUGCUGCu -3'
miRNA:   3'- -GCGUGGAGGUca--------GGGAGC--------AGGCGGCG- -5'
1939 3' -61 NC_001347.2 + 93398 0.68 0.727924
Target:  5'- aCGCGCCgCC-GUCCCgUCGUaguacagcguagaucUCGUCGCg -3'
miRNA:   3'- -GCGUGGaGGuCAGGG-AGCA---------------GGCGGCG- -5'
1939 3' -61 NC_001347.2 + 109492 0.68 0.724246
Target:  5'- gGCGCCUCCAcUUCCgCGg--GCCGCa -3'
miRNA:   3'- gCGUGGAGGUcAGGGaGCaggCGGCG- -5'
1939 3' -61 NC_001347.2 + 38697 0.68 0.724246
Target:  5'- gCGCAgCUCCcGUCCgagCG-CCGUCGCc -3'
miRNA:   3'- -GCGUgGAGGuCAGGga-GCaGGCGGCG- -5'
1939 3' -61 NC_001347.2 + 93627 0.68 0.724246
Target:  5'- gGCACC-CU--UCCaCUCGUCCGUaCGCg -3'
miRNA:   3'- gCGUGGaGGucAGG-GAGCAGGCG-GCG- -5'
1939 3' -61 NC_001347.2 + 168462 0.68 0.715001
Target:  5'- gGCAa--CCGGU-CCUCGucUCCGCCGCc -3'
miRNA:   3'- gCGUggaGGUCAgGGAGC--AGGCGGCG- -5'
1939 3' -61 NC_001347.2 + 195842 0.68 0.705696
Target:  5'- cCGCGCUUCgAGgcgugCCCUUG-CCGCC-Cg -3'
miRNA:   3'- -GCGUGGAGgUCa----GGGAGCaGGCGGcG- -5'
1939 3' -61 NC_001347.2 + 133794 0.68 0.705696
Target:  5'- uGCACCcgcCCGaUCCCUCGUCgGCUucuccgGCg -3'
miRNA:   3'- gCGUGGa--GGUcAGGGAGCAGgCGG------CG- -5'
1939 3' -61 NC_001347.2 + 85985 0.68 0.696336
Target:  5'- aGcCGCCgCCA--CCCgaacCGUCCGCCGCc -3'
miRNA:   3'- gC-GUGGaGGUcaGGGa---GCAGGCGGCG- -5'
1939 3' -61 NC_001347.2 + 31125 0.68 0.68693
Target:  5'- gGCcgGCgUCCAGgcugCCCUgGUugCCGCUGCg -3'
miRNA:   3'- gCG--UGgAGGUCa---GGGAgCA--GGCGGCG- -5'
1939 3' -61 NC_001347.2 + 82885 0.69 0.677484
Target:  5'- gCGCGCCcCCAucgccUCCCgagcgagCGggCCGCCGCu -3'
miRNA:   3'- -GCGUGGaGGUc----AGGGa------GCa-GGCGGCG- -5'
1939 3' -61 NC_001347.2 + 67697 0.69 0.668007
Target:  5'- uGCugCUCC-GUCUcguuCUUG-CCGCCGCc -3'
miRNA:   3'- gCGugGAGGuCAGG----GAGCaGGCGGCG- -5'
1939 3' -61 NC_001347.2 + 37982 0.69 0.668007
Target:  5'- -aCugCUCgCGGUCCagCUCGggcagcagCCGCCGCg -3'
miRNA:   3'- gcGugGAG-GUCAGG--GAGCa-------GGCGGCG- -5'
1939 3' -61 NC_001347.2 + 178858 0.69 0.667057
Target:  5'- uCGUcccgGCCUCCGucgagagcgaguuGUCCUcgUCG-CCGCCGCu -3'
miRNA:   3'- -GCG----UGGAGGU-------------CAGGG--AGCaGGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.