miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1939 5' -52.8 NC_001347.2 + 188255 0.66 0.992274
Target:  5'- aGGUGGUGCAgcGUGAGaaacaGCAGcugaaGGCu -3'
miRNA:   3'- aCCGCCAUGUuuCAUUC-----CGUCa----CCGc -5'
1939 5' -52.8 NC_001347.2 + 152358 0.66 0.98994
Target:  5'- cUGGUGGUG-AGAGUAGuGGUGG-GGCu -3'
miRNA:   3'- -ACCGCCAUgUUUCAUU-CCGUCaCCGc -5'
1939 5' -52.8 NC_001347.2 + 142988 0.66 0.988584
Target:  5'- aGGCGGa--GGAGccggcggcGGCGGUGGUGg -3'
miRNA:   3'- aCCGCCaugUUUCauu-----CCGUCACCGC- -5'
1939 5' -52.8 NC_001347.2 + 140690 0.66 0.988584
Target:  5'- cGGCGGUcGCAu-GUuGGGCGcuagcGUGGCc -3'
miRNA:   3'- aCCGCCA-UGUuuCAuUCCGU-----CACCGc -5'
1939 5' -52.8 NC_001347.2 + 165096 0.67 0.983651
Target:  5'- cGGaGGUAaggAAGGUGcGGCGGUGGUc -3'
miRNA:   3'- aCCgCCAUg--UUUCAUuCCGUCACCGc -5'
1939 5' -52.8 NC_001347.2 + 31376 0.67 0.981692
Target:  5'- cUGGCGaaGCcgccaUGAGGCGGUGGCu -3'
miRNA:   3'- -ACCGCcaUGuuuc-AUUCCGUCACCGc -5'
1939 5' -52.8 NC_001347.2 + 31626 0.67 0.980435
Target:  5'- gUGGCGuGUACAGGGUacGuucuaucccgagaaaGGGaUAGUGGCu -3'
miRNA:   3'- -ACCGC-CAUGUUUCA--U---------------UCC-GUCACCGc -5'
1939 5' -52.8 NC_001347.2 + 95345 0.67 0.979562
Target:  5'- aGGCGGUcgACAAAGaUAAaaacauccuccGUAGUGGCGu -3'
miRNA:   3'- aCCGCCA--UGUUUC-AUUc----------CGUCACCGC- -5'
1939 5' -52.8 NC_001347.2 + 133147 0.67 0.979562
Target:  5'- uUGGUGGU-CAu-----GGCGGUGGUGg -3'
miRNA:   3'- -ACCGCCAuGUuucauuCCGUCACCGC- -5'
1939 5' -52.8 NC_001347.2 + 60664 0.67 0.979562
Target:  5'- cGGgGGUgacGCuguuAGUGGuGGCGGUGGUa -3'
miRNA:   3'- aCCgCCA---UGuu--UCAUU-CCGUCACCGc -5'
1939 5' -52.8 NC_001347.2 + 180251 0.67 0.979339
Target:  5'- aGGCGG-ACGGAG-GAGucugucgaccgcaGCGGUGGCu -3'
miRNA:   3'- aCCGCCaUGUUUCaUUC-------------CGUCACCGc -5'
1939 5' -52.8 NC_001347.2 + 37147 0.67 0.977253
Target:  5'- -cGCGGUucuaucccCGAAuuuGGGCGGUGGCGg -3'
miRNA:   3'- acCGCCAu-------GUUUcauUCCGUCACCGC- -5'
1939 5' -52.8 NC_001347.2 + 135228 0.67 0.977253
Target:  5'- gGGCGGccgAUggGGggAGGGgAGUGGgGg -3'
miRNA:   3'- aCCGCCa--UGuuUCa-UUCCgUCACCgC- -5'
1939 5' -52.8 NC_001347.2 + 7823 0.67 0.977253
Target:  5'- gUGGCGuG-ACGAAGcu-GGUacGGUGGCGg -3'
miRNA:   3'- -ACCGC-CaUGUUUCauuCCG--UCACCGC- -5'
1939 5' -52.8 NC_001347.2 + 139442 0.67 0.974757
Target:  5'- aGGCgaccacGGUGCGAcugcacggcGGcGAGGCGGUGcGCGu -3'
miRNA:   3'- aCCG------CCAUGUU---------UCaUUCCGUCAC-CGC- -5'
1939 5' -52.8 NC_001347.2 + 139081 0.67 0.974757
Target:  5'- uUGGCGGggcuCAcGGUgGAGGCGGauuucGGCGu -3'
miRNA:   3'- -ACCGCCau--GUuUCA-UUCCGUCa----CCGC- -5'
1939 5' -52.8 NC_001347.2 + 164903 0.68 0.972068
Target:  5'- aGGgGGa--GGAG-GAGGCGGUGGCc -3'
miRNA:   3'- aCCgCCaugUUUCaUUCCGUCACCGc -5'
1939 5' -52.8 NC_001347.2 + 142578 0.68 0.969179
Target:  5'- cGGCGGgagcaGCGGGGgc-GGCGGgGGCa -3'
miRNA:   3'- aCCGCCa----UGUUUCauuCCGUCaCCGc -5'
1939 5' -52.8 NC_001347.2 + 153219 0.68 0.969179
Target:  5'- aGGUcGUGCAgcGUGAGGCGcgGGCGc -3'
miRNA:   3'- aCCGcCAUGUuuCAUUCCGUcaCCGC- -5'
1939 5' -52.8 NC_001347.2 + 155575 0.68 0.966082
Target:  5'- cGGCuGGUACGAgcGGU-GGGCucgaggggggaGGUGGUGa -3'
miRNA:   3'- aCCG-CCAUGUU--UCAuUCCG-----------UCACCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.