Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1939 | 5' | -52.8 | NC_001347.2 | + | 188255 | 0.66 | 0.992274 |
Target: 5'- aGGUGGUGCAgcGUGAGaaacaGCAGcugaaGGCu -3' miRNA: 3'- aCCGCCAUGUuuCAUUC-----CGUCa----CCGc -5' |
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1939 | 5' | -52.8 | NC_001347.2 | + | 152358 | 0.66 | 0.98994 |
Target: 5'- cUGGUGGUG-AGAGUAGuGGUGG-GGCu -3' miRNA: 3'- -ACCGCCAUgUUUCAUU-CCGUCaCCGc -5' |
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1939 | 5' | -52.8 | NC_001347.2 | + | 142988 | 0.66 | 0.988584 |
Target: 5'- aGGCGGa--GGAGccggcggcGGCGGUGGUGg -3' miRNA: 3'- aCCGCCaugUUUCauu-----CCGUCACCGC- -5' |
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1939 | 5' | -52.8 | NC_001347.2 | + | 140690 | 0.66 | 0.988584 |
Target: 5'- cGGCGGUcGCAu-GUuGGGCGcuagcGUGGCc -3' miRNA: 3'- aCCGCCA-UGUuuCAuUCCGU-----CACCGc -5' |
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1939 | 5' | -52.8 | NC_001347.2 | + | 37147 | 0.67 | 0.977253 |
Target: 5'- -cGCGGUucuaucccCGAAuuuGGGCGGUGGCGg -3' miRNA: 3'- acCGCCAu-------GUUUcauUCCGUCACCGC- -5' |
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1939 | 5' | -52.8 | NC_001347.2 | + | 135228 | 0.67 | 0.977253 |
Target: 5'- gGGCGGccgAUggGGggAGGGgAGUGGgGg -3' miRNA: 3'- aCCGCCa--UGuuUCa-UUCCgUCACCgC- -5' |
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1939 | 5' | -52.8 | NC_001347.2 | + | 7823 | 0.67 | 0.977253 |
Target: 5'- gUGGCGuG-ACGAAGcu-GGUacGGUGGCGg -3' miRNA: 3'- -ACCGC-CaUGUUUCauuCCG--UCACCGC- -5' |
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1939 | 5' | -52.8 | NC_001347.2 | + | 139442 | 0.67 | 0.974757 |
Target: 5'- aGGCgaccacGGUGCGAcugcacggcGGcGAGGCGGUGcGCGu -3' miRNA: 3'- aCCG------CCAUGUU---------UCaUUCCGUCAC-CGC- -5' |
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1939 | 5' | -52.8 | NC_001347.2 | + | 139081 | 0.67 | 0.974757 |
Target: 5'- uUGGCGGggcuCAcGGUgGAGGCGGauuucGGCGu -3' miRNA: 3'- -ACCGCCau--GUuUCA-UUCCGUCa----CCGC- -5' |
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1939 | 5' | -52.8 | NC_001347.2 | + | 180251 | 0.67 | 0.979339 |
Target: 5'- aGGCGG-ACGGAG-GAGucugucgaccgcaGCGGUGGCu -3' miRNA: 3'- aCCGCCaUGUUUCaUUC-------------CGUCACCGc -5' |
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1939 | 5' | -52.8 | NC_001347.2 | + | 60664 | 0.67 | 0.979562 |
Target: 5'- cGGgGGUgacGCuguuAGUGGuGGCGGUGGUa -3' miRNA: 3'- aCCgCCA---UGuu--UCAUU-CCGUCACCGc -5' |
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1939 | 5' | -52.8 | NC_001347.2 | + | 165096 | 0.67 | 0.983651 |
Target: 5'- cGGaGGUAaggAAGGUGcGGCGGUGGUc -3' miRNA: 3'- aCCgCCAUg--UUUCAUuCCGUCACCGc -5' |
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1939 | 5' | -52.8 | NC_001347.2 | + | 31376 | 0.67 | 0.981692 |
Target: 5'- cUGGCGaaGCcgccaUGAGGCGGUGGCu -3' miRNA: 3'- -ACCGCcaUGuuuc-AUUCCGUCACCGc -5' |
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1939 | 5' | -52.8 | NC_001347.2 | + | 31626 | 0.67 | 0.980435 |
Target: 5'- gUGGCGuGUACAGGGUacGuucuaucccgagaaaGGGaUAGUGGCu -3' miRNA: 3'- -ACCGC-CAUGUUUCA--U---------------UCC-GUCACCGc -5' |
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1939 | 5' | -52.8 | NC_001347.2 | + | 95345 | 0.67 | 0.979562 |
Target: 5'- aGGCGGUcgACAAAGaUAAaaacauccuccGUAGUGGCGu -3' miRNA: 3'- aCCGCCA--UGUUUC-AUUc----------CGUCACCGC- -5' |
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1939 | 5' | -52.8 | NC_001347.2 | + | 133147 | 0.67 | 0.979562 |
Target: 5'- uUGGUGGU-CAu-----GGCGGUGGUGg -3' miRNA: 3'- -ACCGCCAuGUuucauuCCGUCACCGC- -5' |
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1939 | 5' | -52.8 | NC_001347.2 | + | 142578 | 0.68 | 0.969179 |
Target: 5'- cGGCGGgagcaGCGGGGgc-GGCGGgGGCa -3' miRNA: 3'- aCCGCCa----UGUUUCauuCCGUCaCCGc -5' |
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1939 | 5' | -52.8 | NC_001347.2 | + | 164903 | 0.68 | 0.972068 |
Target: 5'- aGGgGGa--GGAG-GAGGCGGUGGCc -3' miRNA: 3'- aCCgCCaugUUUCaUUCCGUCACCGc -5' |
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1939 | 5' | -52.8 | NC_001347.2 | + | 155575 | 0.68 | 0.966082 |
Target: 5'- cGGCuGGUACGAgcGGU-GGGCucgaggggggaGGUGGUGa -3' miRNA: 3'- aCCG-CCAUGUU--UCAuUCCG-----------UCACCGC- -5' |
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1939 | 5' | -52.8 | NC_001347.2 | + | 156781 | 0.68 | 0.962773 |
Target: 5'- cUGGCGGga-GAAGggAAGGCGGcagcGGCa -3' miRNA: 3'- -ACCGCCaugUUUCa-UUCCGUCa---CCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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