miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1939 5' -52.8 NC_001347.2 + 156781 0.68 0.962773
Target:  5'- cUGGCGGga-GAAGggAAGGCGGcagcGGCa -3'
miRNA:   3'- -ACCGCCaugUUUCa-UUCCGUCa---CCGc -5'
1939 5' -52.8 NC_001347.2 + 82693 0.68 0.959245
Target:  5'- -aGCuGGUcccgaACAGGGUGuacGGGUGGUGGCGg -3'
miRNA:   3'- acCG-CCA-----UGUUUCAU---UCCGUCACCGC- -5'
1939 5' -52.8 NC_001347.2 + 36689 0.69 0.947305
Target:  5'- cGGCGGgugGCcuGAGcacgccGAGGCccAGUGGCGg -3'
miRNA:   3'- aCCGCCa--UGu-UUCa-----UUCCG--UCACCGC- -5'
1939 5' -52.8 NC_001347.2 + 148613 0.69 0.947305
Target:  5'- cGGCGGUGCGGucgcGGGUGGccGGCGu -3'
miRNA:   3'- aCCGCCAUGUUucauUCCGUCa-CCGC- -5'
1939 5' -52.8 NC_001347.2 + 173702 0.69 0.94286
Target:  5'- cGGCGGUgguuccgguacGCGGAaaaUGAGcaGCGGUGGCGg -3'
miRNA:   3'- aCCGCCA-----------UGUUUc--AUUC--CGUCACCGC- -5'
1939 5' -52.8 NC_001347.2 + 7951 0.69 0.94286
Target:  5'- aGGUGGUGCGAcugacGGU--GGCGGcGGCa -3'
miRNA:   3'- aCCGCCAUGUU-----UCAuuCCGUCaCCGc -5'
1939 5' -52.8 NC_001347.2 + 108011 0.7 0.922697
Target:  5'- cGGUGGUGguGuGUGauGGGguGUGGUGa -3'
miRNA:   3'- aCCGCCAUguUuCAU--UCCguCACCGC- -5'
1939 5' -52.8 NC_001347.2 + 173831 0.71 0.892117
Target:  5'- gGGCGGcgGCGGAGgaggagGAGGCGGcGGUu -3'
miRNA:   3'- aCCGCCa-UGUUUCa-----UUCCGUCaCCGc -5'
1939 5' -52.8 NC_001347.2 + 228354 0.72 0.86352
Target:  5'- gGGUGGUGCGAugcGGUGGauguGGCGGggugcGGCGg -3'
miRNA:   3'- aCCGCCAUGUU---UCAUU----CCGUCa----CCGC- -5'
1939 5' -52.8 NC_001347.2 + 7882 0.72 0.839855
Target:  5'- cGGCGGUAguGaccAGgu-GGuCAGUGGCGg -3'
miRNA:   3'- aCCGCCAUguU---UCauuCC-GUCACCGC- -5'
1939 5' -52.8 NC_001347.2 + 136122 0.72 0.839855
Target:  5'- gGGagGGUGgGGGGUAGGGCGGgaggcaGGCGg -3'
miRNA:   3'- aCCg-CCAUgUUUCAUUCCGUCa-----CCGC- -5'
1939 5' -52.8 NC_001347.2 + 140638 0.72 0.831578
Target:  5'- gUGGCGGU-CGuGGUGGuGGgGGUGGUGg -3'
miRNA:   3'- -ACCGCCAuGUuUCAUU-CCgUCACCGC- -5'
1939 5' -52.8 NC_001347.2 + 74719 0.73 0.823118
Target:  5'- aUGGCcGUgcGCGAAGUGAGGCcguaguccacGGUGGUGc -3'
miRNA:   3'- -ACCGcCA--UGUUUCAUUCCG----------UCACCGC- -5'
1939 5' -52.8 NC_001347.2 + 229679 0.73 0.814483
Target:  5'- cGGCGGgguguggugGCGGGGUGugucGGCGGUGuGCGc -3'
miRNA:   3'- aCCGCCa--------UGUUUCAUu---CCGUCAC-CGC- -5'
1939 5' -52.8 NC_001347.2 + 200 0.73 0.814483
Target:  5'- cGGCGGgguguggugGCGGGGUGugucGGCGGUGuGCGc -3'
miRNA:   3'- aCCGCCa--------UGUUUCAUu---CCGUCAC-CGC- -5'
1939 5' -52.8 NC_001347.2 + 44048 0.73 0.805683
Target:  5'- cGGUGGUgGCGcuggGGGUGGcGGCAGUGGUa -3'
miRNA:   3'- aCCGCCA-UGU----UUCAUU-CCGUCACCGc -5'
1939 5' -52.8 NC_001347.2 + 173649 0.74 0.759481
Target:  5'- cGGCGucugggAgGAGGUGGcGGCGGUGGCGg -3'
miRNA:   3'- aCCGCca----UgUUUCAUU-CCGUCACCGC- -5'
1939 5' -52.8 NC_001347.2 + 132738 0.74 0.740143
Target:  5'- aGGUGGUGCuca-UGAGGguGUGGUGu -3'
miRNA:   3'- aCCGCCAUGuuucAUUCCguCACCGC- -5'
1939 5' -52.8 NC_001347.2 + 140579 0.75 0.720427
Target:  5'- cGGCGGUGCu-GGcgGGGGUGGUGGaCGa -3'
miRNA:   3'- aCCGCCAUGuuUCa-UUCCGUCACC-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.