Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1939 | 5' | -52.8 | NC_001347.2 | + | 200 | 0.73 | 0.814483 |
Target: 5'- cGGCGGgguguggugGCGGGGUGugucGGCGGUGuGCGc -3' miRNA: 3'- aCCGCCa--------UGUUUCAUu---CCGUCAC-CGC- -5' |
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1939 | 5' | -52.8 | NC_001347.2 | + | 7823 | 0.67 | 0.977253 |
Target: 5'- gUGGCGuG-ACGAAGcu-GGUacGGUGGCGg -3' miRNA: 3'- -ACCGC-CaUGUUUCauuCCG--UCACCGC- -5' |
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1939 | 5' | -52.8 | NC_001347.2 | + | 7882 | 0.72 | 0.839855 |
Target: 5'- cGGCGGUAguGaccAGgu-GGuCAGUGGCGg -3' miRNA: 3'- aCCGCCAUguU---UCauuCC-GUCACCGC- -5' |
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1939 | 5' | -52.8 | NC_001347.2 | + | 7951 | 0.69 | 0.94286 |
Target: 5'- aGGUGGUGCGAcugacGGU--GGCGGcGGCa -3' miRNA: 3'- aCCGCCAUGUU-----UCAuuCCGUCaCCGc -5' |
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1939 | 5' | -52.8 | NC_001347.2 | + | 31376 | 0.67 | 0.981692 |
Target: 5'- cUGGCGaaGCcgccaUGAGGCGGUGGCu -3' miRNA: 3'- -ACCGCcaUGuuuc-AUUCCGUCACCGc -5' |
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1939 | 5' | -52.8 | NC_001347.2 | + | 31626 | 0.67 | 0.980435 |
Target: 5'- gUGGCGuGUACAGGGUacGuucuaucccgagaaaGGGaUAGUGGCu -3' miRNA: 3'- -ACCGC-CAUGUUUCA--U---------------UCC-GUCACCGc -5' |
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1939 | 5' | -52.8 | NC_001347.2 | + | 36689 | 0.69 | 0.947305 |
Target: 5'- cGGCGGgugGCcuGAGcacgccGAGGCccAGUGGCGg -3' miRNA: 3'- aCCGCCa--UGu-UUCa-----UUCCG--UCACCGC- -5' |
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1939 | 5' | -52.8 | NC_001347.2 | + | 37147 | 0.67 | 0.977253 |
Target: 5'- -cGCGGUucuaucccCGAAuuuGGGCGGUGGCGg -3' miRNA: 3'- acCGCCAu-------GUUUcauUCCGUCACCGC- -5' |
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1939 | 5' | -52.8 | NC_001347.2 | + | 44048 | 0.73 | 0.805683 |
Target: 5'- cGGUGGUgGCGcuggGGGUGGcGGCAGUGGUa -3' miRNA: 3'- aCCGCCA-UGU----UUCAUU-CCGUCACCGc -5' |
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1939 | 5' | -52.8 | NC_001347.2 | + | 60664 | 0.67 | 0.979562 |
Target: 5'- cGGgGGUgacGCuguuAGUGGuGGCGGUGGUa -3' miRNA: 3'- aCCgCCA---UGuu--UCAUU-CCGUCACCGc -5' |
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1939 | 5' | -52.8 | NC_001347.2 | + | 74719 | 0.73 | 0.823118 |
Target: 5'- aUGGCcGUgcGCGAAGUGAGGCcguaguccacGGUGGUGc -3' miRNA: 3'- -ACCGcCA--UGUUUCAUUCCG----------UCACCGC- -5' |
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1939 | 5' | -52.8 | NC_001347.2 | + | 82693 | 0.68 | 0.959245 |
Target: 5'- -aGCuGGUcccgaACAGGGUGuacGGGUGGUGGCGg -3' miRNA: 3'- acCG-CCA-----UGUUUCAU---UCCGUCACCGC- -5' |
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1939 | 5' | -52.8 | NC_001347.2 | + | 95345 | 0.67 | 0.979562 |
Target: 5'- aGGCGGUcgACAAAGaUAAaaacauccuccGUAGUGGCGu -3' miRNA: 3'- aCCGCCA--UGUUUC-AUUc----------CGUCACCGC- -5' |
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1939 | 5' | -52.8 | NC_001347.2 | + | 108011 | 0.7 | 0.922697 |
Target: 5'- cGGUGGUGguGuGUGauGGGguGUGGUGa -3' miRNA: 3'- aCCGCCAUguUuCAU--UCCguCACCGC- -5' |
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1939 | 5' | -52.8 | NC_001347.2 | + | 132738 | 0.74 | 0.740143 |
Target: 5'- aGGUGGUGCuca-UGAGGguGUGGUGu -3' miRNA: 3'- aCCGCCAUGuuucAUUCCguCACCGC- -5' |
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1939 | 5' | -52.8 | NC_001347.2 | + | 133147 | 0.67 | 0.979562 |
Target: 5'- uUGGUGGU-CAu-----GGCGGUGGUGg -3' miRNA: 3'- -ACCGCCAuGUuucauuCCGUCACCGC- -5' |
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1939 | 5' | -52.8 | NC_001347.2 | + | 135228 | 0.67 | 0.977253 |
Target: 5'- gGGCGGccgAUggGGggAGGGgAGUGGgGg -3' miRNA: 3'- aCCGCCa--UGuuUCa-UUCCgUCACCgC- -5' |
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1939 | 5' | -52.8 | NC_001347.2 | + | 136122 | 0.72 | 0.839855 |
Target: 5'- gGGagGGUGgGGGGUAGGGCGGgaggcaGGCGg -3' miRNA: 3'- aCCg-CCAUgUUUCAUUCCGUCa-----CCGC- -5' |
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1939 | 5' | -52.8 | NC_001347.2 | + | 139081 | 0.67 | 0.974757 |
Target: 5'- uUGGCGGggcuCAcGGUgGAGGCGGauuucGGCGu -3' miRNA: 3'- -ACCGCCau--GUuUCA-UUCCGUCa----CCGC- -5' |
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1939 | 5' | -52.8 | NC_001347.2 | + | 139442 | 0.67 | 0.974757 |
Target: 5'- aGGCgaccacGGUGCGAcugcacggcGGcGAGGCGGUGcGCGu -3' miRNA: 3'- aCCG------CCAUGUU---------UCaUUCCGUCAC-CGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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