miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19390 5' -51.9 NC_004685.1 + 19390 0.66 0.934496
Target:  5'- -cGUcgCugGUCGaUCACGAcGACggGCCAa -3'
miRNA:   3'- caCAa-GugCAGCaAGUGCU-CUG--CGGU- -5'
19390 5' -51.9 NC_004685.1 + 34249 0.66 0.934496
Target:  5'- -cGUUCGCGUCGggCaacaACGcGuCGCCGc -3'
miRNA:   3'- caCAAGUGCAGCaaG----UGCuCuGCGGU- -5'
19390 5' -51.9 NC_004685.1 + 19257 0.66 0.929003
Target:  5'- gGUGUUCugcgACGUCGUggAUGAGGC-CCu -3'
miRNA:   3'- -CACAAG----UGCAGCAagUGCUCUGcGGu -5'
19390 5' -51.9 NC_004685.1 + 28533 0.67 0.904257
Target:  5'- aUGUUguCGcCGgucCAgGAGACGCCAc -3'
miRNA:   3'- cACAAguGCaGCaa-GUgCUCUGCGGU- -5'
19390 5' -51.9 NC_004685.1 + 3483 0.67 0.904257
Target:  5'- uUGUUgGCGUCGUggccgcaCACGuuGACgGCCAu -3'
miRNA:   3'- cACAAgUGCAGCAa------GUGCu-CUG-CGGU- -5'
19390 5' -51.9 NC_004685.1 + 11203 0.67 0.897385
Target:  5'- aUGUUCaACG-CGUUCGCcgacGGugGCCGc -3'
miRNA:   3'- cACAAG-UGCaGCAAGUGc---UCugCGGU- -5'
19390 5' -51.9 NC_004685.1 + 60984 0.68 0.833223
Target:  5'- gGUGUUCGgGUCGacCACGcAGGCcguGCCGg -3'
miRNA:   3'- -CACAAGUgCAGCaaGUGC-UCUG---CGGU- -5'
19390 5' -51.9 NC_004685.1 + 4434 0.68 0.833223
Target:  5'- -gGUUCGCGUCaGgcCGCGuucGGGCGCCc -3'
miRNA:   3'- caCAAGUGCAG-CaaGUGC---UCUGCGGu -5'
19390 5' -51.9 NC_004685.1 + 57817 0.68 0.824159
Target:  5'- cGUGUUCACGUCGUcgGCGAcGAUcUCAc -3'
miRNA:   3'- -CACAAGUGCAGCAagUGCU-CUGcGGU- -5'
19390 5' -51.9 NC_004685.1 + 3818 0.69 0.785978
Target:  5'- ---aUCuCGUCGggCgACGGGACGCCGc -3'
miRNA:   3'- cacaAGuGCAGCaaG-UGCUCUGCGGU- -5'
19390 5' -51.9 NC_004685.1 + 20464 0.7 0.734725
Target:  5'- -cGUUCggccGCGUUGgcCACGcGGACGCCAg -3'
miRNA:   3'- caCAAG----UGCAGCaaGUGC-UCUGCGGU- -5'
19390 5' -51.9 NC_004685.1 + 10663 0.71 0.713419
Target:  5'- cUGgaucgUCGCGUCGUgugGCGGGGCGCgCAc -3'
miRNA:   3'- cACa----AGUGCAGCAag-UGCUCUGCG-GU- -5'
19390 5' -51.9 NC_004685.1 + 612 1.1 0.002918
Target:  5'- cGUGUUCACGUCGUUCACGAGACGCCAa -3'
miRNA:   3'- -CACAAGUGCAGCAAGUGCUCUGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.