miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19391 3' -45.9 NC_004685.1 + 19246 0.66 0.999216
Target:  5'- cCGAUgUAgCCGCGGCCGAgauacagcGACAc -3'
miRNA:   3'- cGCUAgAUaGGUGCUGGUUaaa-----CUGU- -5'
19391 3' -45.9 NC_004685.1 + 65457 0.66 0.999216
Target:  5'- aGCGAUCgugAUCCGCG-UCGGg--GGCc -3'
miRNA:   3'- -CGCUAGa--UAGGUGCuGGUUaaaCUGu -5'
19391 3' -45.9 NC_004685.1 + 5104 0.66 0.999216
Target:  5'- -aGGUCUGUCUGCGGCaugucgUUGAUu -3'
miRNA:   3'- cgCUAGAUAGGUGCUGguua--AACUGu -5'
19391 3' -45.9 NC_004685.1 + 39436 0.66 0.999022
Target:  5'- gGUGGUCUgGUCCGCG-CCGcc--GACAg -3'
miRNA:   3'- -CGCUAGA-UAGGUGCuGGUuaaaCUGU- -5'
19391 3' -45.9 NC_004685.1 + 20752 0.66 0.999022
Target:  5'- cGCGG-CacUCCGCGACCAuc-UGGCc -3'
miRNA:   3'- -CGCUaGauAGGUGCUGGUuaaACUGu -5'
19391 3' -45.9 NC_004685.1 + 2320 0.66 0.999022
Target:  5'- aGCGG---AUgCGCGACCAG-UUGACGc -3'
miRNA:   3'- -CGCUagaUAgGUGCUGGUUaAACUGU- -5'
19391 3' -45.9 NC_004685.1 + 28111 0.66 0.998509
Target:  5'- cGCGcagcagCUGUCCaggGCGACCAAcgaccUGACGc -3'
miRNA:   3'- -CGCua----GAUAGG---UGCUGGUUaa---ACUGU- -5'
19391 3' -45.9 NC_004685.1 + 3970 0.67 0.997786
Target:  5'- cGCGGUCcagaaGUCCGCGGgCAGac-GACAg -3'
miRNA:   3'- -CGCUAGa----UAGGUGCUgGUUaaaCUGU- -5'
19391 3' -45.9 NC_004685.1 + 47686 0.67 0.997326
Target:  5'- uGCGGUCgauuucggCCGCGGCU---UUGGCGg -3'
miRNA:   3'- -CGCUAGaua-----GGUGCUGGuuaAACUGU- -5'
19391 3' -45.9 NC_004685.1 + 21286 0.67 0.997326
Target:  5'- uCGAUCgccugCCGCGACacg-UUGACGu -3'
miRNA:   3'- cGCUAGaua--GGUGCUGguuaAACUGU- -5'
19391 3' -45.9 NC_004685.1 + 20692 0.67 0.995449
Target:  5'- cGCGGUCaUAgaugCCGCGgACCAGg--GACu -3'
miRNA:   3'- -CGCUAG-AUa---GGUGC-UGGUUaaaCUGu -5'
19391 3' -45.9 NC_004685.1 + 39392 0.67 0.995449
Target:  5'- cGUGGUUgccggggCCGCGACCAAcg-GGCGg -3'
miRNA:   3'- -CGCUAGaua----GGUGCUGGUUaaaCUGU- -5'
19391 3' -45.9 NC_004685.1 + 18865 0.68 0.993684
Target:  5'- gGCGGUCagaugcgcgCCACGGCCAccc-GACAg -3'
miRNA:   3'- -CGCUAGaua------GGUGCUGGUuaaaCUGU- -5'
19391 3' -45.9 NC_004685.1 + 43486 0.68 0.993684
Target:  5'- uUGAUCUGcgCCGCGGCCccgUUGAa- -3'
miRNA:   3'- cGCUAGAUa-GGUGCUGGuuaAACUgu -5'
19391 3' -45.9 NC_004685.1 + 9594 0.68 0.992615
Target:  5'- cGCGAUCa--CCGCGaACCAGUUgagcGACc -3'
miRNA:   3'- -CGCUAGauaGGUGC-UGGUUAAa---CUGu -5'
19391 3' -45.9 NC_004685.1 + 62572 0.68 0.992615
Target:  5'- gGCGuucCUGUCaCcCGACCAGcUUGACGa -3'
miRNA:   3'- -CGCua-GAUAG-GuGCUGGUUaAACUGU- -5'
19391 3' -45.9 NC_004685.1 + 45200 0.68 0.992615
Target:  5'- gGCGAcCUGUacgCCGCGGCCGAgccgggUGAUu -3'
miRNA:   3'- -CGCUaGAUA---GGUGCUGGUUaa----ACUGu -5'
19391 3' -45.9 NC_004685.1 + 27545 0.69 0.988525
Target:  5'- gGCGGUCaUGgccgcagcggguUCCgggGCGugCGGUUUGACAg -3'
miRNA:   3'- -CGCUAG-AU------------AGG---UGCugGUUAAACUGU- -5'
19391 3' -45.9 NC_004685.1 + 35486 0.69 0.988525
Target:  5'- cCGGUCgggccggugAUCCGCGAgCGGUccUUGACGg -3'
miRNA:   3'- cGCUAGa--------UAGGUGCUgGUUA--AACUGU- -5'
19391 3' -45.9 NC_004685.1 + 46857 0.69 0.983721
Target:  5'- gGCGAUCUGUCgAUGGCCugggGUuuugccugguacguuUUGGCGu -3'
miRNA:   3'- -CGCUAGAUAGgUGCUGGu---UA---------------AACUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.