miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19392 3' -53.4 NC_004685.1 + 58312 0.66 0.901405
Target:  5'- gCGGACCUUGGUCGGccCGGccGGCa- -3'
miRNA:   3'- aGCCUGGAGUCAGCCa-GCUacUUGcg -5'
19392 3' -53.4 NC_004685.1 + 18538 0.66 0.901405
Target:  5'- gUCGGACgccauCUCGauGgccCGGUCGAucUGGGCGUa -3'
miRNA:   3'- -AGCCUG-----GAGU--Ca--GCCAGCU--ACUUGCG- -5'
19392 3' -53.4 NC_004685.1 + 8816 0.66 0.880126
Target:  5'- cUGGACCUCAGcauggaGGgguUCGAUGuGCGg -3'
miRNA:   3'- aGCCUGGAGUCag----CC---AGCUACuUGCg -5'
19392 3' -53.4 NC_004685.1 + 64325 0.66 0.872535
Target:  5'- cCGGGCCgaggCAacccUCGGcUCG-UGGACGCu -3'
miRNA:   3'- aGCCUGGa---GUc---AGCC-AGCuACUUGCG- -5'
19392 3' -53.4 NC_004685.1 + 61047 0.66 0.872535
Target:  5'- gCGGuGgCUCGGUUuGUCGAUGGACa- -3'
miRNA:   3'- aGCC-UgGAGUCAGcCAGCUACUUGcg -5'
19392 3' -53.4 NC_004685.1 + 20168 0.67 0.861505
Target:  5'- gCGGGCUggccgacgaacgcCAGgUGGUCGAgGAACGCc -3'
miRNA:   3'- aGCCUGGa------------GUCaGCCAGCUaCUUGCG- -5'
19392 3' -53.4 NC_004685.1 + 33173 0.67 0.856639
Target:  5'- gUGGcACCggcCGGUggugggcgcCGGUgCGGUGGACGCg -3'
miRNA:   3'- aGCC-UGGa--GUCA---------GCCA-GCUACUUGCG- -5'
19392 3' -53.4 NC_004685.1 + 1862 0.67 0.856639
Target:  5'- cUCGG-CUUCGGccaGGUUGAgGAugGCg -3'
miRNA:   3'- -AGCCuGGAGUCag-CCAGCUaCUugCG- -5'
19392 3' -53.4 NC_004685.1 + 46689 0.67 0.856639
Target:  5'- cCGGGCCuaUCGG-CGG-CGAUGccacgagacgacAACGCg -3'
miRNA:   3'- aGCCUGG--AGUCaGCCaGCUAC------------UUGCG- -5'
19392 3' -53.4 NC_004685.1 + 21071 0.67 0.856639
Target:  5'- aCGGGCCg-AGUCGaugaaGUCGAUGAcCGg -3'
miRNA:   3'- aGCCUGGagUCAGC-----CAGCUACUuGCg -5'
19392 3' -53.4 NC_004685.1 + 39961 0.67 0.840698
Target:  5'- gUUGGGCUUCAGcuuggacgccaccagCGcGUCGAUGGcCGCc -3'
miRNA:   3'- -AGCCUGGAGUCa--------------GC-CAGCUACUuGCG- -5'
19392 3' -53.4 NC_004685.1 + 6978 0.67 0.839837
Target:  5'- cUCGGACgcgcaUgGG-CGG-CGAUGGAUGCg -3'
miRNA:   3'- -AGCCUGg----AgUCaGCCaGCUACUUGCG- -5'
19392 3' -53.4 NC_004685.1 + 25410 0.67 0.839837
Target:  5'- uUCGGGCaCgggCAGUCGucuUCGAUG-GCGUg -3'
miRNA:   3'- -AGCCUG-Ga--GUCAGCc--AGCUACuUGCG- -5'
19392 3' -53.4 NC_004685.1 + 53049 0.67 0.839837
Target:  5'- cUCGGucACgUUGGUCGGcacgaucccuUCGGUgGAGCGCa -3'
miRNA:   3'- -AGCC--UGgAGUCAGCC----------AGCUA-CUUGCG- -5'
19392 3' -53.4 NC_004685.1 + 10091 0.67 0.839837
Target:  5'- cCGGGCg-CGGgugCaGUCGAUGAGCGg -3'
miRNA:   3'- aGCCUGgaGUCa--GcCAGCUACUUGCg -5'
19392 3' -53.4 NC_004685.1 + 22411 0.67 0.831117
Target:  5'- gCGGACUggCGGUUGGcggugcugUCGAUGGugGa -3'
miRNA:   3'- aGCCUGGa-GUCAGCC--------AGCUACUugCg -5'
19392 3' -53.4 NC_004685.1 + 53816 0.67 0.822194
Target:  5'- gUCGGGuguguagcCCUCcugaaGGUCGGcCGGUG-GCGCu -3'
miRNA:   3'- -AGCCU--------GGAG-----UCAGCCaGCUACuUGCG- -5'
19392 3' -53.4 NC_004685.1 + 56165 0.68 0.813079
Target:  5'- gUCGGuGCCUC-GUCGGggCGGUcccGGCGCu -3'
miRNA:   3'- -AGCC-UGGAGuCAGCCa-GCUAc--UUGCG- -5'
19392 3' -53.4 NC_004685.1 + 893 0.68 0.803781
Target:  5'- cUUGGugUcgugggugCAGUCGGaUCGGUGAuCGCc -3'
miRNA:   3'- -AGCCugGa-------GUCAGCC-AGCUACUuGCG- -5'
19392 3' -53.4 NC_004685.1 + 43316 0.68 0.803781
Target:  5'- cUUGG-CCUCGGUCa--CGAUGAucuGCGCa -3'
miRNA:   3'- -AGCCuGGAGUCAGccaGCUACU---UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.