miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19392 5' -55.2 NC_004685.1 + 61383 0.66 0.819052
Target:  5'- aCCGaccuGUCGUgGgacGAGGCGuuugagaugGCCCGCg -3'
miRNA:   3'- -GGCg---CAGUAgU---UUCCGCuga------CGGGCG- -5'
19392 5' -55.2 NC_004685.1 + 54151 0.66 0.819052
Target:  5'- uCCGaGUCG-CGAcGGCGAgccaucGCCCGCg -3'
miRNA:   3'- -GGCgCAGUaGUUuCCGCUga----CGGGCG- -5'
19392 5' -55.2 NC_004685.1 + 38606 0.66 0.819052
Target:  5'- uUCGaUGaUGUCGAAGGCGAUccgcgcggUGCCCGg -3'
miRNA:   3'- -GGC-GCaGUAGUUUCCGCUG--------ACGGGCg -5'
19392 5' -55.2 NC_004685.1 + 66132 0.66 0.819052
Target:  5'- aCGUGggCAUCGgcGGUGAcCUGUaCCGCc -3'
miRNA:   3'- gGCGCa-GUAGUuuCCGCU-GACG-GGCG- -5'
19392 5' -55.2 NC_004685.1 + 8234 0.66 0.809938
Target:  5'- -aGCGUCggCuacGGCGACgcUGCCCa- -3'
miRNA:   3'- ggCGCAGuaGuuuCCGCUG--ACGGGcg -5'
19392 5' -55.2 NC_004685.1 + 64436 0.66 0.809938
Target:  5'- gCCaGCGUCu----GGGCGGCcgccauUGCCCGa -3'
miRNA:   3'- -GG-CGCAGuaguuUCCGCUG------ACGGGCg -5'
19392 5' -55.2 NC_004685.1 + 1333 0.66 0.809938
Target:  5'- gUGCGUCcgCGAAGcccUGAUUGCCUGg -3'
miRNA:   3'- gGCGCAGuaGUUUCc--GCUGACGGGCg -5'
19392 5' -55.2 NC_004685.1 + 38755 0.66 0.809938
Target:  5'- aCGCccaccaCGUU--GGGCGACUGCCacaGCu -3'
miRNA:   3'- gGCGca----GUAGuuUCCGCUGACGGg--CG- -5'
19392 5' -55.2 NC_004685.1 + 11532 0.66 0.809938
Target:  5'- aCgGCGcUCAUgCGucGGCG-CUGCgCUGCg -3'
miRNA:   3'- -GgCGC-AGUA-GUuuCCGCuGACG-GGCG- -5'
19392 5' -55.2 NC_004685.1 + 52092 0.66 0.809938
Target:  5'- cCCgGCGUCggCAcugaucAGGGUGACcGCCCu- -3'
miRNA:   3'- -GG-CGCAGuaGU------UUCCGCUGaCGGGcg -5'
19392 5' -55.2 NC_004685.1 + 18920 0.66 0.809938
Target:  5'- gCCGCGaCggCGcGGGCGAgaUGCUgGCg -3'
miRNA:   3'- -GGCGCaGuaGUuUCCGCUg-ACGGgCG- -5'
19392 5' -55.2 NC_004685.1 + 69358 0.66 0.800647
Target:  5'- aCCGCGcgccugcugugCGUCAccGGCGAUUGUggCGCg -3'
miRNA:   3'- -GGCGCa----------GUAGUuuCCGCUGACGg-GCG- -5'
19392 5' -55.2 NC_004685.1 + 26043 0.66 0.800647
Target:  5'- aCCGCGgCAgCGAcGGCGaccGCUGUCgGCc -3'
miRNA:   3'- -GGCGCaGUaGUUuCCGC---UGACGGgCG- -5'
19392 5' -55.2 NC_004685.1 + 49780 0.66 0.797826
Target:  5'- cCCGCGUCAUCGgcagcaacccacccGucucuggcGGGCGAgUaaacacGCaCCGCa -3'
miRNA:   3'- -GGCGCAGUAGU--------------U--------UCCGCUgA------CG-GGCG- -5'
19392 5' -55.2 NC_004685.1 + 31138 0.66 0.791188
Target:  5'- uUCGCGUagGUCAucGGCGAacgucuugguCUGCuuGUc -3'
miRNA:   3'- -GGCGCAg-UAGUuuCCGCU----------GACGggCG- -5'
19392 5' -55.2 NC_004685.1 + 52346 0.66 0.791188
Target:  5'- gCUGCG-CGaUGAAGGCGGCccUGCCgGUg -3'
miRNA:   3'- -GGCGCaGUaGUUUCCGCUG--ACGGgCG- -5'
19392 5' -55.2 NC_004685.1 + 32031 0.66 0.791188
Target:  5'- aCCGcCGUCAUCGAAcacgccCGGCUGaggaCCGUa -3'
miRNA:   3'- -GGC-GCAGUAGUUUcc----GCUGACg---GGCG- -5'
19392 5' -55.2 NC_004685.1 + 45883 0.66 0.790233
Target:  5'- aCCGCGacggugaaggcCAUCGAGgaucgcugcgcucGGCG-CUGCCCGg -3'
miRNA:   3'- -GGCGCa----------GUAGUUU-------------CCGCuGACGGGCg -5'
19392 5' -55.2 NC_004685.1 + 45537 0.66 0.785436
Target:  5'- gCGCgGUgAUCAcgcgggccacuacggAGGGCGcuguGCUGCCCaGCu -3'
miRNA:   3'- gGCG-CAgUAGU---------------UUCCGC----UGACGGG-CG- -5'
19392 5' -55.2 NC_004685.1 + 36304 0.66 0.781571
Target:  5'- aCCuCGUCAUC-GAGGUGGCacaGuUCCGCa -3'
miRNA:   3'- -GGcGCAGUAGuUUCCGCUGa--C-GGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.