miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19393 5' -54.5 NC_004685.1 + 15640 0.66 0.846975
Target:  5'- -gCGGACCCGAggaggaGCCCGAgGCu---- -3'
miRNA:   3'- caGCUUGGGCUa-----CGGGCUgUGcuacu -5'
19393 5' -54.5 NC_004685.1 + 34084 0.66 0.846975
Target:  5'- -cUGGGCCUGGcuccaCCGACAUGGUGAa -3'
miRNA:   3'- caGCUUGGGCUacg--GGCUGUGCUACU- -5'
19393 5' -54.5 NC_004685.1 + 2173 0.66 0.846975
Target:  5'- aUgGGACCCGAUcaGCgCGACAUGGcagGAg -3'
miRNA:   3'- cAgCUUGGGCUA--CGgGCUGUGCUa--CU- -5'
19393 5' -54.5 NC_004685.1 + 21888 0.66 0.838424
Target:  5'- -cUGAGCCCGAggcugaGCCCGAgGC--UGAg -3'
miRNA:   3'- caGCUUGGGCUa-----CGGGCUgUGcuACU- -5'
19393 5' -54.5 NC_004685.1 + 44840 0.66 0.838424
Target:  5'- cGUCGggUCCGAccaccaggGCacgccggugCCGcACACGGUGAu -3'
miRNA:   3'- -CAGCuuGGGCUa-------CG---------GGC-UGUGCUACU- -5'
19393 5' -54.5 NC_004685.1 + 34003 0.66 0.838424
Target:  5'- -aCGAaaGCgCCGGUGCCCGACuccAUGccGAa -3'
miRNA:   3'- caGCU--UG-GGCUACGGGCUG---UGCuaCU- -5'
19393 5' -54.5 NC_004685.1 + 39180 0.66 0.838424
Target:  5'- -gCGAACCCGucggccgcguUGCcacccuugCCGAgCACGAUGAc -3'
miRNA:   3'- caGCUUGGGCu---------ACG--------GGCU-GUGCUACU- -5'
19393 5' -54.5 NC_004685.1 + 17599 0.66 0.829663
Target:  5'- uGUUGAugACCCGcagGCCacugccaGACugGAUGGu -3'
miRNA:   3'- -CAGCU--UGGGCua-CGGg------CUGugCUACU- -5'
19393 5' -54.5 NC_004685.1 + 15599 0.66 0.820702
Target:  5'- cGUCGAcuacaacCCCGgcGaCCCuGACAUGGUGGa -3'
miRNA:   3'- -CAGCUu------GGGCuaC-GGG-CUGUGCUACU- -5'
19393 5' -54.5 NC_004685.1 + 31699 0.66 0.820702
Target:  5'- gGUCGGACCCguccagucGAUGCCCcgguucuCACGGUu- -3'
miRNA:   3'- -CAGCUUGGG--------CUACGGGcu-----GUGCUAcu -5'
19393 5' -54.5 NC_004685.1 + 59475 0.66 0.81155
Target:  5'- gGUCG-ACgUGcUGCCCGACAccgaagagcagcCGAUGAa -3'
miRNA:   3'- -CAGCuUGgGCuACGGGCUGU------------GCUACU- -5'
19393 5' -54.5 NC_004685.1 + 16682 0.66 0.81155
Target:  5'- aUgGAACCCaacGAgGCCCGA-GCGAUGGa -3'
miRNA:   3'- cAgCUUGGG---CUaCGGGCUgUGCUACU- -5'
19393 5' -54.5 NC_004685.1 + 56094 0.66 0.810624
Target:  5'- uUCGGGCUCGAcgcgaccUGCCCcuGCuGCGGUGAg -3'
miRNA:   3'- cAGCUUGGGCU-------ACGGGc-UG-UGCUACU- -5'
19393 5' -54.5 NC_004685.1 + 20318 0.66 0.802216
Target:  5'- uGUCGAuguGCCCGAcggGCCgGACggcgGCGgcGAa -3'
miRNA:   3'- -CAGCU---UGGGCUa--CGGgCUG----UGCuaCU- -5'
19393 5' -54.5 NC_004685.1 + 32900 0.66 0.802216
Target:  5'- -aUGGGCggcauggCGGUGCCCGACAaGGUGAa -3'
miRNA:   3'- caGCUUGg------GCUACGGGCUGUgCUACU- -5'
19393 5' -54.5 NC_004685.1 + 60446 0.66 0.801273
Target:  5'- gGUCgGAACCCGAcucGCCggCGACgaaggccGCGGUGAa -3'
miRNA:   3'- -CAG-CUUGGGCUa--CGG--GCUG-------UGCUACU- -5'
19393 5' -54.5 NC_004685.1 + 24587 0.67 0.796532
Target:  5'- -gCGGACCCGAgcgggcGCCgGACAUcucgaacgacaaccaGAUGAu -3'
miRNA:   3'- caGCUUGGGCUa-----CGGgCUGUG---------------CUACU- -5'
19393 5' -54.5 NC_004685.1 + 35405 0.67 0.79271
Target:  5'- -cCG-GCCCGA---CCGGCACGGUGAu -3'
miRNA:   3'- caGCuUGGGCUacgGGCUGUGCUACU- -5'
19393 5' -54.5 NC_004685.1 + 64819 0.67 0.79271
Target:  5'- uGUCGAACCCGAcaaacggaUGC-UGAUACcaGGUGAu -3'
miRNA:   3'- -CAGCUUGGGCU--------ACGgGCUGUG--CUACU- -5'
19393 5' -54.5 NC_004685.1 + 36905 0.67 0.773224
Target:  5'- cGUUGGGgCCGGUGCCgGugAUGAc-- -3'
miRNA:   3'- -CAGCUUgGGCUACGGgCugUGCUacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.