miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19394 3' -52.4 NC_004685.1 + 13510 0.66 0.936522
Target:  5'- uGGaGuCGUCGggucagCGGCGAcagGUCGCg -3'
miRNA:   3'- cCCgCuGUAGCaaa---GCCGCUa--CAGCG- -5'
19394 3' -52.4 NC_004685.1 + 28533 0.66 0.936522
Target:  5'- uGGCGcGCG-CG-UUCGGCuugGUCGCg -3'
miRNA:   3'- cCCGC-UGUaGCaAAGCCGcuaCAGCG- -5'
19394 3' -52.4 NC_004685.1 + 26359 0.66 0.936522
Target:  5'- aGGGUGAgGggGgugUCGGCGAacacggaGUCGUa -3'
miRNA:   3'- -CCCGCUgUagCaa-AGCCGCUa------CAGCG- -5'
19394 3' -52.4 NC_004685.1 + 27314 0.66 0.931221
Target:  5'- uGGCGGCGUCGg--UGGUGccGaacuUCGCc -3'
miRNA:   3'- cCCGCUGUAGCaaaGCCGCuaC----AGCG- -5'
19394 3' -52.4 NC_004685.1 + 40744 0.66 0.931221
Target:  5'- cGGUGACAgcagCGUcccgUCGcGCaGAUGcUCGCc -3'
miRNA:   3'- cCCGCUGUa---GCAa---AGC-CG-CUAC-AGCG- -5'
19394 3' -52.4 NC_004685.1 + 31075 0.66 0.925652
Target:  5'- cGGCGACAUgGgugCGGCGcucGaCGCc -3'
miRNA:   3'- cCCGCUGUAgCaaaGCCGCua-CaGCG- -5'
19394 3' -52.4 NC_004685.1 + 24534 0.66 0.925652
Target:  5'- cGGCGACcaguugCGggUCGGgGG-GUUGCc -3'
miRNA:   3'- cCCGCUGua----GCaaAGCCgCUaCAGCG- -5'
19394 3' -52.4 NC_004685.1 + 31315 0.66 0.923928
Target:  5'- cGGCGGCAaCGggUaCggcgcgcagcagcaGGCGAUGUgGCa -3'
miRNA:   3'- cCCGCUGUaGCaaA-G--------------CCGCUACAgCG- -5'
19394 3' -52.4 NC_004685.1 + 57302 0.66 0.919813
Target:  5'- gGGGcCGACcgUGgacgCGGCcGGUGcCGCc -3'
miRNA:   3'- -CCC-GCUGuaGCaaa-GCCG-CUACaGCG- -5'
19394 3' -52.4 NC_004685.1 + 45514 0.66 0.919813
Target:  5'- cGGUGugAUCG--UCGGCGugcUGagCGCg -3'
miRNA:   3'- cCCGCugUAGCaaAGCCGCu--ACa-GCG- -5'
19394 3' -52.4 NC_004685.1 + 48569 0.66 0.919813
Target:  5'- uGGCGuuCGUCGUUgUCGGCGcgcUGaucggCGCg -3'
miRNA:   3'- cCCGCu-GUAGCAA-AGCCGCu--ACa----GCG- -5'
19394 3' -52.4 NC_004685.1 + 39059 0.66 0.919813
Target:  5'- aGGGUGGauguCAUCGUgcUCGGCaagGGUGgcaaCGCg -3'
miRNA:   3'- -CCCGCU----GUAGCAa-AGCCG---CUACa---GCG- -5'
19394 3' -52.4 NC_004685.1 + 63982 0.66 0.913705
Target:  5'- uGGCuACuucUCGUggCGGUGGUG-CGCg -3'
miRNA:   3'- cCCGcUGu--AGCAaaGCCGCUACaGCG- -5'
19394 3' -52.4 NC_004685.1 + 15205 0.66 0.913705
Target:  5'- aGGCGGCAUUacg-CGGUGAgugCGCu -3'
miRNA:   3'- cCCGCUGUAGcaaaGCCGCUacaGCG- -5'
19394 3' -52.4 NC_004685.1 + 11392 0.66 0.913705
Target:  5'- uGGCGcgaAUCGagcgccgggUUUCGGCGGUGgcCGCc -3'
miRNA:   3'- cCCGCug-UAGC---------AAAGCCGCUACa-GCG- -5'
19394 3' -52.4 NC_004685.1 + 11547 0.66 0.911821
Target:  5'- cGGCGcugcgcugcgcuggGCAUCGUgUCGGCuGUccacggcagGUCGCg -3'
miRNA:   3'- cCCGC--------------UGUAGCAaAGCCGcUA---------CAGCG- -5'
19394 3' -52.4 NC_004685.1 + 9653 0.66 0.909913
Target:  5'- aGGGCGACgccacccccgauccgGUCaucUCGGUGAUGuUCGa -3'
miRNA:   3'- -CCCGCUG---------------UAGcaaAGCCGCUAC-AGCg -5'
19394 3' -52.4 NC_004685.1 + 48186 0.66 0.907331
Target:  5'- cGGGCGACggcuggGUCGgcacgUUCGGUGccauccUG-CGCg -3'
miRNA:   3'- -CCCGCUG------UAGCa----AAGCCGCu-----ACaGCG- -5'
19394 3' -52.4 NC_004685.1 + 4252 0.66 0.907331
Target:  5'- cGGGCGuCGUCGgcaagcUCGcCGAgGUCGUc -3'
miRNA:   3'- -CCCGCuGUAGCaa----AGCcGCUaCAGCG- -5'
19394 3' -52.4 NC_004685.1 + 6990 0.66 0.907331
Target:  5'- uGGGCGGCGauggaugCGgcuaccCGcGCGAcgGUCGCg -3'
miRNA:   3'- -CCCGCUGUa------GCaaa---GC-CGCUa-CAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.