miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19394 5' -58.1 NC_004685.1 + 33953 0.66 0.657709
Target:  5'- -gGUGCGCCGCUucuGGGgCGGCGa---- -3'
miRNA:   3'- agCGCGUGGCGA---UCCgGCUGCaucuc -5'
19394 5' -58.1 NC_004685.1 + 43074 0.66 0.647124
Target:  5'- cCGCGguCgGCUGGGCgcacAUGUGGGGa -3'
miRNA:   3'- aGCGCguGgCGAUCCGgc--UGCAUCUC- -5'
19394 5' -58.1 NC_004685.1 + 60898 0.66 0.647124
Target:  5'- gCGCGUAUCuCgauGGCCGugGUGGu- -3'
miRNA:   3'- aGCGCGUGGcGau-CCGGCugCAUCuc -5'
19394 5' -58.1 NC_004685.1 + 36978 0.66 0.647124
Target:  5'- aCGUGC-CCGCggccgcGGCCGACGa---- -3'
miRNA:   3'- aGCGCGuGGCGau----CCGGCUGCaucuc -5'
19394 5' -58.1 NC_004685.1 + 10708 0.66 0.636525
Target:  5'- cCGCGCGCaCGggAGGCUGcCaUGGAGc -3'
miRNA:   3'- aGCGCGUG-GCgaUCCGGCuGcAUCUC- -5'
19394 5' -58.1 NC_004685.1 + 21344 0.66 0.636525
Target:  5'- -gGCGUACUGCU-GGCCGAgacCGUuGAc -3'
miRNA:   3'- agCGCGUGGCGAuCCGGCU---GCAuCUc -5'
19394 5' -58.1 NC_004685.1 + 9793 0.66 0.625923
Target:  5'- uUCGCcUACCGC--GGCCGccGCGgcGAGg -3'
miRNA:   3'- -AGCGcGUGGCGauCCGGC--UGCauCUC- -5'
19394 5' -58.1 NC_004685.1 + 37740 0.66 0.625923
Target:  5'- ---gGCGCUGCUGGgcaucccggcuGCCGugGUGGAa -3'
miRNA:   3'- agcgCGUGGCGAUC-----------CGGCugCAUCUc -5'
19394 5' -58.1 NC_004685.1 + 26312 0.66 0.625923
Target:  5'- cUCGCGCGCCugaAGuCCGGCGUcGGGGg -3'
miRNA:   3'- -AGCGCGUGGcgaUCcGGCUGCA-UCUC- -5'
19394 5' -58.1 NC_004685.1 + 13484 0.66 0.625923
Target:  5'- gUCGCGCACCGgacaguccuCgauGGCCGA-GgcGAGc -3'
miRNA:   3'- -AGCGCGUGGC---------Gau-CCGGCUgCauCUC- -5'
19394 5' -58.1 NC_004685.1 + 33092 0.66 0.622743
Target:  5'- -aGCGCACCGCccaguuGGUgcgcgacuggaucgCGGCGUGGGa -3'
miRNA:   3'- agCGCGUGGCGau----CCG--------------GCUGCAUCUc -5'
19394 5' -58.1 NC_004685.1 + 43955 0.66 0.614267
Target:  5'- cCGCGacgauggugacgaUGCCGCUGGGCgCGAUGUGa-- -3'
miRNA:   3'- aGCGC-------------GUGGCGAUCCG-GCUGCAUcuc -5'
19394 5' -58.1 NC_004685.1 + 12387 0.66 0.604742
Target:  5'- aUCGUGCACCGCaccgaggugcacUGGGaugaCGGgcaUGUGGAGc -3'
miRNA:   3'- -AGCGCGUGGCG------------AUCCg---GCU---GCAUCUC- -5'
19394 5' -58.1 NC_004685.1 + 63264 0.66 0.604742
Target:  5'- gUCGCGCAggCGCU-GGCCGAacggguUGUAGcAGg -3'
miRNA:   3'- -AGCGCGUg-GCGAuCCGGCU------GCAUC-UC- -5'
19394 5' -58.1 NC_004685.1 + 19348 0.66 0.604742
Target:  5'- gUGCGCACCGCcaAGGCgacagcgugcaUGAUGgcGGGg -3'
miRNA:   3'- aGCGCGUGGCGa-UCCG-----------GCUGCauCUC- -5'
19394 5' -58.1 NC_004685.1 + 55723 0.67 0.59418
Target:  5'- cCGCGCACCGCggugaucGGCaCGAUGa---- -3'
miRNA:   3'- aGCGCGUGGCGau-----CCG-GCUGCaucuc -5'
19394 5' -58.1 NC_004685.1 + 18698 0.67 0.582597
Target:  5'- aUCGCGUucgacgugGCgGCUGGGCCaACccgcuggGUGGAGg -3'
miRNA:   3'- -AGCGCG--------UGgCGAUCCGGcUG-------CAUCUC- -5'
19394 5' -58.1 NC_004685.1 + 8172 0.67 0.573154
Target:  5'- aUUGC-CGCCGCgcacgAGGCCGGguuCGaGGAGg -3'
miRNA:   3'- -AGCGcGUGGCGa----UCCGGCU---GCaUCUC- -5'
19394 5' -58.1 NC_004685.1 + 68299 0.67 0.562705
Target:  5'- -gGCGCGCCGC-GGGuCCGAgUGUGcGGGu -3'
miRNA:   3'- agCGCGUGGCGaUCC-GGCU-GCAU-CUC- -5'
19394 5' -58.1 NC_004685.1 + 758 0.67 0.562705
Target:  5'- aUGCGCGCUGCcgacccGGCCGcCGaaaUGGAGa -3'
miRNA:   3'- aGCGCGUGGCGau----CCGGCuGC---AUCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.