miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19395 5' -55.8 NC_004685.1 + 49685 0.66 0.781571
Target:  5'- cUCGCGCAgacGGGUGgCGAaccaCCGGGCgCGGg -3'
miRNA:   3'- aGGUGUGU---UCUACaGCU----GGCCCG-GCU- -5'
19395 5' -55.8 NC_004685.1 + 68364 0.66 0.781571
Target:  5'- gCCGCGCGGGuccgaGUGUgCGugcgccCCGGGuCCGAg -3'
miRNA:   3'- aGGUGUGUUC-----UACA-GCu-----GGCCC-GGCU- -5'
19395 5' -55.8 NC_004685.1 + 65920 0.66 0.771807
Target:  5'- gCCGCACcgcGAgcuUCGGCCGGG-CGAa -3'
miRNA:   3'- aGGUGUGuu-CUac-AGCUGGCCCgGCU- -5'
19395 5' -55.8 NC_004685.1 + 46754 0.66 0.771807
Target:  5'- gCUGCugGGGGUGcUGGCCGucaucGGCCGGg -3'
miRNA:   3'- aGGUGugUUCUACaGCUGGC-----CCGGCU- -5'
19395 5' -55.8 NC_004685.1 + 60351 0.66 0.771807
Target:  5'- cCCAUGCGGGc---CGACCGGcGCCGu -3'
miRNA:   3'- aGGUGUGUUCuacaGCUGGCC-CGGCu -5'
19395 5' -55.8 NC_004685.1 + 14365 0.66 0.771807
Target:  5'- aUCCACAC--GAUGUCGgugGCCucGCCGGu -3'
miRNA:   3'- -AGGUGUGuuCUACAGC---UGGccCGGCU- -5'
19395 5' -55.8 NC_004685.1 + 55667 0.66 0.761906
Target:  5'- cCCGCGCugcgAGGGUG-CGACgCuGGCCGGc -3'
miRNA:   3'- aGGUGUG----UUCUACaGCUG-GcCCGGCU- -5'
19395 5' -55.8 NC_004685.1 + 30249 0.66 0.760909
Target:  5'- gUCC-CGCGAuaccugcGAUGgccggggCuGCCGGGCCGAg -3'
miRNA:   3'- -AGGuGUGUU-------CUACa------GcUGGCCCGGCU- -5'
19395 5' -55.8 NC_004685.1 + 8457 0.66 0.751879
Target:  5'- aCgGCGCGaagacGGGUG-CGGCCGcgcuGGCCGAg -3'
miRNA:   3'- aGgUGUGU-----UCUACaGCUGGC----CCGGCU- -5'
19395 5' -55.8 NC_004685.1 + 62108 0.66 0.751879
Target:  5'- gCCGacgaACucguuGcgGUUGACCGGGCUGGc -3'
miRNA:   3'- aGGUg---UGuu---CuaCAGCUGGCCCGGCU- -5'
19395 5' -55.8 NC_004685.1 + 48073 0.66 0.751879
Target:  5'- cUUCGCGCAGGAUGgcacCGAaCGuGCCGAc -3'
miRNA:   3'- -AGGUGUGUUCUACa---GCUgGCcCGGCU- -5'
19395 5' -55.8 NC_004685.1 + 58308 0.66 0.751879
Target:  5'- -gCACGC-GGAccuugGUCGGCCcGGCCGGc -3'
miRNA:   3'- agGUGUGuUCUa----CAGCUGGcCCGGCU- -5'
19395 5' -55.8 NC_004685.1 + 61582 0.66 0.745806
Target:  5'- gCCGC-CGGGcgGUCGGCCGuucuacucgaacgacGGCCa- -3'
miRNA:   3'- aGGUGuGUUCuaCAGCUGGC---------------CCGGcu -5'
19395 5' -55.8 NC_004685.1 + 28902 0.67 0.721145
Target:  5'- gCCGCcggaacCAGGAcuUCGAcCCGGGCCGc -3'
miRNA:   3'- aGGUGu-----GUUCUacAGCU-GGCCCGGCu -5'
19395 5' -55.8 NC_004685.1 + 68003 0.67 0.721145
Target:  5'- gUUCGCGCAc-GUGUCGcguGCCGGGCUu- -3'
miRNA:   3'- -AGGUGUGUucUACAGC---UGGCCCGGcu -5'
19395 5' -55.8 NC_004685.1 + 48440 0.67 0.710718
Target:  5'- cCCGCACccuGUG-CGA-CGGGCCGAu -3'
miRNA:   3'- aGGUGUGuucUACaGCUgGCCCGGCU- -5'
19395 5' -55.8 NC_004685.1 + 23114 0.67 0.710718
Target:  5'- cUCCACACcaucgacacGGAucgUGUCG-UCGGGCUGGa -3'
miRNA:   3'- -AGGUGUGu--------UCU---ACAGCuGGCCCGGCU- -5'
19395 5' -55.8 NC_004685.1 + 31344 0.67 0.700218
Target:  5'- aUCUGCGCGGccgcGAUGcCGACCaGGcCCGAg -3'
miRNA:   3'- -AGGUGUGUU----CUACaGCUGGcCC-GGCU- -5'
19395 5' -55.8 NC_004685.1 + 2395 0.67 0.689655
Target:  5'- aUCCGCugGAGcc-UCGGCCcGGUCGAc -3'
miRNA:   3'- -AGGUGugUUCuacAGCUGGcCCGGCU- -5'
19395 5' -55.8 NC_004685.1 + 21067 0.67 0.689655
Target:  5'- gCCGaguCGAuGAaGUCGAugaCCGGGCCGAc -3'
miRNA:   3'- aGGUgu-GUU-CUaCAGCU---GGCCCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.