Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 19396 | 3' | -54.3 | NC_004685.1 | + | 42885 | 0.66 | 0.814775 |
|
Target: 5'- ---cCAGGGUccacgacaccGACGgaUCCUGGGUGuAGu -3' miRNA: 3'- aaaaGUCCCA----------CUGC--AGGACCCAC-UCc -5' |
|||||||
| 19396 | 3' | -54.3 | NC_004685.1 | + | 52076 | 0.66 | 0.814775 |
|
Target: 5'- --aUCAGGGUGAcCGcCCUGGuUGGc- -3' miRNA: 3'- aaaAGUCCCACU-GCaGGACCcACUcc -5' |
|||||||
| 19396 | 3' | -54.3 | NC_004685.1 | + | 2816 | 0.73 | 0.410702 |
|
Target: 5'- -cUUgAGcGUGGCGUCgaGGGUGGGGg -3' miRNA: 3'- aaAAgUCcCACUGCAGgaCCCACUCC- -5' |
|||||||
| 19396 | 3' | -54.3 | NC_004685.1 | + | 40156 | 0.73 | 0.410702 |
|
Target: 5'- --gUCGGGGaucaagGAUuaCCUGGGUGAGGa -3' miRNA: 3'- aaaAGUCCCa-----CUGcaGGACCCACUCC- -5' |
|||||||
| 19396 | 3' | -54.3 | NC_004685.1 | + | 14243 | 0.75 | 0.3328 |
|
Target: 5'- -gUUCAGGGUGGCGagcaugUCCugcauggcgcguUGGGUGAGa -3' miRNA: 3'- aaAAGUCCCACUGC------AGG------------ACCCACUCc -5' |
|||||||
| 19396 | 3' | -54.3 | NC_004685.1 | + | 3109 | 1.08 | 0.002033 |
|
Target: 5'- aUUUUCAGGGUGACGUCCUGGGUGAGGc -3' miRNA: 3'- -AAAAGUCCCACUGCAGGACCCACUCC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home