miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19396 5' -56.4 NC_004685.1 + 14946 0.66 0.757196
Target:  5'- aUCAUCGCGuuGuuga--GCUCGGCCu -3'
miRNA:   3'- gAGUAGCGCggCuugcagUGGGUCGG- -5'
19396 5' -56.4 NC_004685.1 + 19431 0.66 0.757196
Target:  5'- gUCGUCGCGCCcacAGCGagAgggUCCGGUCg -3'
miRNA:   3'- gAGUAGCGCGGc--UUGCagU---GGGUCGG- -5'
19396 5' -56.4 NC_004685.1 + 13979 0.66 0.757196
Target:  5'- --gGUCGCGCCGuucauccgcAAgGUCACCCucgguuccGGCg -3'
miRNA:   3'- gagUAGCGCGGC---------UUgCAGUGGG--------UCGg -5'
19396 5' -56.4 NC_004685.1 + 16826 0.66 0.757196
Target:  5'- ----aCGCGCUGcugcgcuACGUCGCC-AGCCu -3'
miRNA:   3'- gaguaGCGCGGCu------UGCAGUGGgUCGG- -5'
19396 5' -56.4 NC_004685.1 + 24622 0.66 0.747176
Target:  5'- cCUCGuUCG-GCuCGGGguugGUCACCCAGUCa -3'
miRNA:   3'- -GAGU-AGCgCG-GCUUg---CAGUGGGUCGG- -5'
19396 5' -56.4 NC_004685.1 + 14507 0.66 0.747176
Target:  5'- ---uUCGCGgCGGAacccguCGUCAUCgAGCCg -3'
miRNA:   3'- gaguAGCGCgGCUU------GCAGUGGgUCGG- -5'
19396 5' -56.4 NC_004685.1 + 9889 0.66 0.747176
Target:  5'- cCUCGcCGCGgCGGccGCGguaggCGaacCCCAGCCg -3'
miRNA:   3'- -GAGUaGCGCgGCU--UGCa----GU---GGGUCGG- -5'
19396 5' -56.4 NC_004685.1 + 47758 0.66 0.737048
Target:  5'- ----cCaCGCCGAGuCGuUCugCCAGCCa -3'
miRNA:   3'- gaguaGcGCGGCUU-GC-AGugGGUCGG- -5'
19396 5' -56.4 NC_004685.1 + 66068 0.66 0.737048
Target:  5'- -gUAUCGCGCCGAguACGggcugGCgCAGCg -3'
miRNA:   3'- gaGUAGCGCGGCU--UGCag---UGgGUCGg -5'
19396 5' -56.4 NC_004685.1 + 66444 0.66 0.737048
Target:  5'- gCUCA-CGUaGCCGGAC-UC-CUCGGCCg -3'
miRNA:   3'- -GAGUaGCG-CGGCUUGcAGuGGGUCGG- -5'
19396 5' -56.4 NC_004685.1 + 64429 0.66 0.737048
Target:  5'- gUCAgCGUccacgaGCCGAGgGUUGCCuCGGCCc -3'
miRNA:   3'- gAGUaGCG------CGGCUUgCAGUGG-GUCGG- -5'
19396 5' -56.4 NC_004685.1 + 56040 0.66 0.737048
Target:  5'- cCUCugggCaCGCCcAGCG-CACCCAGUCg -3'
miRNA:   3'- -GAGua--GcGCGGcUUGCaGUGGGUCGG- -5'
19396 5' -56.4 NC_004685.1 + 34246 0.66 0.737048
Target:  5'- uCUCGuUCGCGUCGGgcaacaacGCGUCGCC--GCUg -3'
miRNA:   3'- -GAGU-AGCGCGGCU--------UGCAGUGGguCGG- -5'
19396 5' -56.4 NC_004685.1 + 33114 0.66 0.737048
Target:  5'- aUCGUagaGCGCguccaCGAACGUCACgCCGuCCu -3'
miRNA:   3'- gAGUAg--CGCG-----GCUUGCAGUG-GGUcGG- -5'
19396 5' -56.4 NC_004685.1 + 44701 0.66 0.737048
Target:  5'- ----cCGgGCCGGAC---ACCCGGCCg -3'
miRNA:   3'- gaguaGCgCGGCUUGcagUGGGUCGG- -5'
19396 5' -56.4 NC_004685.1 + 64951 0.66 0.737048
Target:  5'- ----gCGCGCCGAccACGgauGCCCcucGGCCg -3'
miRNA:   3'- gaguaGCGCGGCU--UGCag-UGGG---UCGG- -5'
19396 5' -56.4 NC_004685.1 + 41621 0.66 0.737048
Target:  5'- uUCAgUCGCGaCGAACG-C-CUCGGCCc -3'
miRNA:   3'- gAGU-AGCGCgGCUUGCaGuGGGUCGG- -5'
19396 5' -56.4 NC_004685.1 + 43357 0.66 0.730922
Target:  5'- -gCAUCGCGCagcaGGACGgcuccUACCCgaaccgcuucaacggGGCCg -3'
miRNA:   3'- gaGUAGCGCGg---CUUGCa----GUGGG---------------UCGG- -5'
19396 5' -56.4 NC_004685.1 + 66772 0.66 0.730922
Target:  5'- gCUCAccUCGgGCCGGcauggccacaccgucACcagGUCACCCgucgGGCCg -3'
miRNA:   3'- -GAGU--AGCgCGGCU---------------UG---CAGUGGG----UCGG- -5'
19396 5' -56.4 NC_004685.1 + 37524 0.66 0.72682
Target:  5'- ----gCGCGCUGugguggccGCGuUCAUCCAGCCc -3'
miRNA:   3'- gaguaGCGCGGCu-------UGC-AGUGGGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.