miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19397 3' -60.1 NC_004685.1 + 36887 0.66 0.577922
Target:  5'- --cGUCGGCcGCGgCCGCgGGCacgUCGGg -3'
miRNA:   3'- gaaCGGCUGcUGCgGGCGgUCG---AGCC- -5'
19397 3' -60.1 NC_004685.1 + 45196 0.66 0.577922
Target:  5'- --cGCCGGCGAccuguaCGCCgCGgCCgAGC-CGGg -3'
miRNA:   3'- gaaCGGCUGCU------GCGG-GC-GG-UCGaGCC- -5'
19397 3' -60.1 NC_004685.1 + 14410 0.66 0.577922
Target:  5'- --gGCuCGAUGACGacggguUCCGCCGcgaagcGCUCGGc -3'
miRNA:   3'- gaaCG-GCUGCUGC------GGGCGGU------CGAGCC- -5'
19397 3' -60.1 NC_004685.1 + 38544 0.66 0.577922
Target:  5'- -aUGCCGAuCGGCGCUaucuCGUggauCGGCUgGGg -3'
miRNA:   3'- gaACGGCU-GCUGCGG----GCG----GUCGAgCC- -5'
19397 3' -60.1 NC_004685.1 + 20317 0.66 0.577922
Target:  5'- -aUGUCGAUG-UGCCCGaCgGGC-CGGa -3'
miRNA:   3'- gaACGGCUGCuGCGGGC-GgUCGaGCC- -5'
19397 3' -60.1 NC_004685.1 + 4230 0.66 0.567666
Target:  5'- ---cCCGGCGACGCguuCgGCCAGCUUc- -3'
miRNA:   3'- gaacGGCUGCUGCG---GgCGGUCGAGcc -5'
19397 3' -60.1 NC_004685.1 + 36985 0.66 0.567666
Target:  5'- -cUGcCCGACG-UGCCCGC-GGCcgCGGc -3'
miRNA:   3'- gaAC-GGCUGCuGCGGGCGgUCGa-GCC- -5'
19397 3' -60.1 NC_004685.1 + 41347 0.66 0.567666
Target:  5'- uUUGCUGACGugGCgaugaucgcgCCGCUGGCgaugUCGu -3'
miRNA:   3'- gAACGGCUGCugCG----------GGCGGUCG----AGCc -5'
19397 3' -60.1 NC_004685.1 + 13702 0.66 0.567666
Target:  5'- gCUUGCgguugCGACGGCGCUCGaugucCUCGGg -3'
miRNA:   3'- -GAACG-----GCUGCUGCGGGCgguc-GAGCC- -5'
19397 3' -60.1 NC_004685.1 + 61496 0.66 0.567666
Target:  5'- --gGCCGAC--CGCCCGgCGGCgUCGc -3'
miRNA:   3'- gaaCGGCUGcuGCGGGCgGUCG-AGCc -5'
19397 3' -60.1 NC_004685.1 + 51466 0.66 0.567666
Target:  5'- --aGCCGACGACaGCUCGauCCAGUcCGc -3'
miRNA:   3'- gaaCGGCUGCUG-CGGGC--GGUCGaGCc -5'
19397 3' -60.1 NC_004685.1 + 20116 0.66 0.567666
Target:  5'- -gUGCUGGCGAUGCgCgGCgAGgaUCGGu -3'
miRNA:   3'- gaACGGCUGCUGCG-GgCGgUCg-AGCC- -5'
19397 3' -60.1 NC_004685.1 + 58732 0.66 0.567666
Target:  5'- --gGCCgucaucauGACGaACGCCUGCCcGGCgCGGu -3'
miRNA:   3'- gaaCGG--------CUGC-UGCGGGCGG-UCGaGCC- -5'
19397 3' -60.1 NC_004685.1 + 55487 0.66 0.567666
Target:  5'- -cUGaCCGaggguGCGACGCUgGCCgaGGCUgCGGg -3'
miRNA:   3'- gaAC-GGC-----UGCUGCGGgCGG--UCGA-GCC- -5'
19397 3' -60.1 NC_004685.1 + 34692 0.66 0.566642
Target:  5'- -aUGaCCGACucuuccucggccaGGCGCUCGgCAGCgUCGGc -3'
miRNA:   3'- gaAC-GGCUG-------------CUGCGGGCgGUCG-AGCC- -5'
19397 3' -60.1 NC_004685.1 + 30460 0.66 0.566642
Target:  5'- --aGCCGAgccuuguCGGCGUCgGUCAGgUUGGg -3'
miRNA:   3'- gaaCGGCU-------GCUGCGGgCGGUCgAGCC- -5'
19397 3' -60.1 NC_004685.1 + 48222 0.66 0.557455
Target:  5'- -gUGCCGgcaugagcuACGACcuggaCCUGCgUAGCUCGGg -3'
miRNA:   3'- gaACGGC---------UGCUGc----GGGCG-GUCGAGCC- -5'
19397 3' -60.1 NC_004685.1 + 31329 0.66 0.557455
Target:  5'- -aUGCCGAccaggcccgagcCGACGCCCuuGCCA-C-CGGg -3'
miRNA:   3'- gaACGGCU------------GCUGCGGG--CGGUcGaGCC- -5'
19397 3' -60.1 NC_004685.1 + 1897 0.66 0.557455
Target:  5'- --gGCCG-CGGCcguGCCCGCUgcGGCcgCGGu -3'
miRNA:   3'- gaaCGGCuGCUG---CGGGCGG--UCGa-GCC- -5'
19397 3' -60.1 NC_004685.1 + 11648 0.66 0.557455
Target:  5'- --aGCCGAcaCGAUGCCCaGCgCAGCgcagCGc -3'
miRNA:   3'- gaaCGGCU--GCUGCGGG-CG-GUCGa---GCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.