miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19399 3' -55.8 NC_004685.1 + 58012 0.66 0.775115
Target:  5'- gCGAGGAG-CUGCaCGca--GCCAUCGc -3'
miRNA:   3'- -GCUCCUCaGACGaGCugagCGGUAGC- -5'
19399 3' -55.8 NC_004685.1 + 26514 0.67 0.735012
Target:  5'- -aAGGAcgGUgUGCUCGuCUCGCCGcCGc -3'
miRNA:   3'- gcUCCU--CAgACGAGCuGAGCGGUaGC- -5'
19399 3' -55.8 NC_004685.1 + 50144 0.67 0.724715
Target:  5'- cCGAGGAG-CUGCgcaaGGCUCGUgA-CGa -3'
miRNA:   3'- -GCUCCUCaGACGag--CUGAGCGgUaGC- -5'
19399 3' -55.8 NC_004685.1 + 29453 0.67 0.693342
Target:  5'- cCGAGGGGUUccggcaGCUgGAgCcCGCCAUCGu -3'
miRNA:   3'- -GCUCCUCAGa-----CGAgCU-GaGCGGUAGC- -5'
19399 3' -55.8 NC_004685.1 + 54698 0.67 0.693342
Target:  5'- cCGGGGAG-CUGCUCGG--UGCCGagguccgcUCGg -3'
miRNA:   3'- -GCUCCUCaGACGAGCUgaGCGGU--------AGC- -5'
19399 3' -55.8 NC_004685.1 + 54042 0.68 0.661464
Target:  5'- gCGGGGAuGcCgcggGCgauGGCUCGCCGUCGc -3'
miRNA:   3'- -GCUCCU-CaGa---CGag-CUGAGCGGUAGC- -5'
19399 3' -55.8 NC_004685.1 + 57411 0.68 0.661464
Target:  5'- aGAGGgaacGGgaaCUGCUCGACUCGCaccuggCGc -3'
miRNA:   3'- gCUCC----UCa--GACGAGCUGAGCGgua---GC- -5'
19399 3' -55.8 NC_004685.1 + 22025 0.68 0.629352
Target:  5'- gGAGGGGUCgccucagGCUCGGcCUUGUCcUCa -3'
miRNA:   3'- gCUCCUCAGa------CGAGCU-GAGCGGuAGc -5'
19399 3' -55.8 NC_004685.1 + 62759 0.72 0.434865
Target:  5'- gCGAGGAGaaUCgGCUCGgucuGCUCGCCG-CGc -3'
miRNA:   3'- -GCUCCUC--AGaCGAGC----UGAGCGGUaGC- -5'
19399 3' -55.8 NC_004685.1 + 45760 0.74 0.32349
Target:  5'- gCGAuGAGUCUGCUCGACaCGCUggCGc -3'
miRNA:   3'- -GCUcCUCAGACGAGCUGaGCGGuaGC- -5'
19399 3' -55.8 NC_004685.1 + 69620 0.81 0.11166
Target:  5'- cCGGGGAG-CUGCUCGGCUUGCCcUUGc -3'
miRNA:   3'- -GCUCCUCaGACGAGCUGAGCGGuAGC- -5'
19399 3' -55.8 NC_004685.1 + 5104 1.1 0.001222
Target:  5'- cCGAGGAGUCUGCUCGACUCGCCAUCGa -3'
miRNA:   3'- -GCUCCUCAGACGAGCUGAGCGGUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.