miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19399 5' -53.3 NC_004685.1 + 12161 0.66 0.895242
Target:  5'- cGCGagACAGCGuuCGAGGGCAacCUCa- -3'
miRNA:   3'- cCGU--UGUUGCu-GCUCCCGUguGAGcu -5'
19399 5' -53.3 NC_004685.1 + 17174 0.66 0.895242
Target:  5'- gGGCGucuACAucguguuCGAUGAGuGGCACAgCUaCGAg -3'
miRNA:   3'- -CCGU---UGUu------GCUGCUC-CCGUGU-GA-GCU- -5'
19399 5' -53.3 NC_004685.1 + 9804 0.66 0.895242
Target:  5'- cGGCcGCcGCGGCGAGguggucccGGCGCACa--- -3'
miRNA:   3'- -CCGuUGuUGCUGCUC--------CCGUGUGagcu -5'
19399 5' -53.3 NC_004685.1 + 53246 0.66 0.895242
Target:  5'- gGGC-GCAAcCGGCu-GGGCGUGCUCGAc -3'
miRNA:   3'- -CCGuUGUU-GCUGcuCCCGUGUGAGCU- -5'
19399 5' -53.3 NC_004685.1 + 19426 0.66 0.88811
Target:  5'- cGCGcccACAGCGA-GAGGGUcCGgUCGAu -3'
miRNA:   3'- cCGU---UGUUGCUgCUCCCGuGUgAGCU- -5'
19399 5' -53.3 NC_004685.1 + 412 0.66 0.88811
Target:  5'- aGGCGGCGGCGAgcuCG-GGGCuaagcaucagccGCGgUCGGu -3'
miRNA:   3'- -CCGUUGUUGCU---GCuCCCG------------UGUgAGCU- -5'
19399 5' -53.3 NC_004685.1 + 32567 0.66 0.88811
Target:  5'- aGGUugGGCAGCGcCGGGGcCGCGC-CGAu -3'
miRNA:   3'- -CCG--UUGUUGCuGCUCCcGUGUGaGCU- -5'
19399 5' -53.3 NC_004685.1 + 9521 0.66 0.880722
Target:  5'- aGCGACAACG-CGcGGGCgacaACGCaagCGAa -3'
miRNA:   3'- cCGUUGUUGCuGCuCCCG----UGUGa--GCU- -5'
19399 5' -53.3 NC_004685.1 + 56926 0.66 0.880722
Target:  5'- cGGCAuucACAgccACGACGGcGGGCAgACcUGGc -3'
miRNA:   3'- -CCGU---UGU---UGCUGCU-CCCGUgUGaGCU- -5'
19399 5' -53.3 NC_004685.1 + 56661 0.66 0.880722
Target:  5'- uGGCGACGgagaaggugaaGCcGCGcAGGGUguacacccagACGCUCGAa -3'
miRNA:   3'- -CCGUUGU-----------UGcUGC-UCCCG----------UGUGAGCU- -5'
19399 5' -53.3 NC_004685.1 + 30017 0.66 0.873084
Target:  5'- cGGCAugGugGGCGgcaAGGGCgGCAagggCGGc -3'
miRNA:   3'- -CCGUugUugCUGC---UCCCG-UGUga--GCU- -5'
19399 5' -53.3 NC_004685.1 + 61507 0.66 0.873084
Target:  5'- cGGCGGCGucGCGACGAucauuuGGCcacccccagGCugUCGAc -3'
miRNA:   3'- -CCGUUGU--UGCUGCUc-----CCG---------UGugAGCU- -5'
19399 5' -53.3 NC_004685.1 + 48185 0.66 0.873084
Target:  5'- gGGCGACGGCuGgGucGGCACGUUCGGu -3'
miRNA:   3'- -CCGUUGUUGcUgCucCCGUGUGAGCU- -5'
19399 5' -53.3 NC_004685.1 + 26628 0.66 0.872307
Target:  5'- uGGCGACGcgcaccgagugcgGCGGCGAGacgaGCACAC-CGu -3'
miRNA:   3'- -CCGUUGU-------------UGCUGCUCc---CGUGUGaGCu -5'
19399 5' -53.3 NC_004685.1 + 33450 0.66 0.865201
Target:  5'- cGGCGAaGGCGACu-GGGCcgcCACUUGGg -3'
miRNA:   3'- -CCGUUgUUGCUGcuCCCGu--GUGAGCU- -5'
19399 5' -53.3 NC_004685.1 + 28935 0.66 0.865201
Target:  5'- gGGCGGCGGCaACcuuGGCGCGCUCa- -3'
miRNA:   3'- -CCGUUGUUGcUGcucCCGUGUGAGcu -5'
19399 5' -53.3 NC_004685.1 + 9973 0.66 0.865201
Target:  5'- uGGcCGACGACGcCGuGGGCGagauGCUCa- -3'
miRNA:   3'- -CC-GUUGUUGCuGCuCCCGUg---UGAGcu -5'
19399 5' -53.3 NC_004685.1 + 34872 0.66 0.865201
Target:  5'- aGGaCGGC-GCGugGGuGGGCACcgcgcagcuGCUCGGc -3'
miRNA:   3'- -CC-GUUGuUGCugCU-CCCGUG---------UGAGCU- -5'
19399 5' -53.3 NC_004685.1 + 32498 0.66 0.865201
Target:  5'- uGGCAgGCAACGGCGgcaagcucggccAGGGCGCgaaccuucccgGCgUCGGc -3'
miRNA:   3'- -CCGU-UGUUGCUGC------------UCCCGUG-----------UG-AGCU- -5'
19399 5' -53.3 NC_004685.1 + 13699 0.66 0.865201
Target:  5'- cGGCGcaccuGCAACGAgCGAcuGGGCcuguCACUgGAc -3'
miRNA:   3'- -CCGU-----UGUUGCU-GCU--CCCGu---GUGAgCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.